miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26523_tgu-mir-338:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 agcaacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcaacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgt 60
Query: 61 tgttagtggtaa 72
||||||||||||
Sbjct: 61 tgttagtggtaa 72
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 63.9 bits (32), Expect = 1e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 3 caacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgttg 62
||||| ||||||||||| ||| |||| | || |||||||||||||||||||||||||||
Sbjct: 1 caacaatatcctgatgccgtctgagtgtgcgggaaagctccagcatcagtgattttgttg 60
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gctccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 46 gctccagcatcagtgattttgttg 69
>26805_cfa-mir-338:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 36 ctccagcatcagtgattttgttg 58
>27131_eca-mir-338:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 37 ctccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 37 ctccagcatcagtgattttgttg 59
>27442_mdo-mir-338:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>27850_mml-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>27851_mml-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>28587_hsa-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>28588_hsa-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 33 ctccagcatcagtgattttgttg 11
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 33 ctccagcatcagtgattttgttg 11
>30334_ptr-mir-338:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>30955_ppy-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>30956_ppy-mir-338:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 41 ctccagcatcagtgattttgttg 63
>32004_mmu-mir-338:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 60 ctccagcatcagtgattttgttg 82
>32005_mmu-mir-338:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 60 ctccagcatcagtgattttgttg 82
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 37 ctccagcatcagtgattttgttg 15
>32856_rno-mir-338:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>33022_rno-mir-3065:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 44 ctccagcatcagtgattttgttg 22
>33023_rno-mir-3065:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 44 ctccagcatcagtgattttgttg 22
>33326_bta-mir-338:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 54 ctccagcatcagtgattttgttg 76
>34061_ssc-mir-338:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 70 ctccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 70 ctccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
