miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31548_oan-mir-363:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaatt 60
Query: 61 gcacggtatccatctgtaaaccgca 85
|||||||||||||||||||||||||
Sbjct: 61 gcacggtatccatctgtaaaccgca 85
>34071_ssc-mir-363:mirbase
Length = 80
Score = 135 bits (68), Expect = 6e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 6 gctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacg 65
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 gctgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacg 60
Query: 66 gtatccatctgtaaaccgca 85
||||||||||||||||||||
Sbjct: 61 gtatccatctgtaaaccgca 80
>27145_eca-mir-363:mirbase
Length = 75
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggt 60
Query: 68 atccatctgtaaacc 82
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>27863_mml-mir-363:mirbase
Length = 75
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacggt 60
Query: 68 atccatctgtaaacc 82
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>30967_ppy-mir-363:mirbase
Length = 75
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtatcataggagaaaaattgcacggt 60
Query: 68 atccatctgtaaacc 82
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>33337_bta-mir-363:mirbase
Length = 74
Score = 121 bits (61), Expect = 9e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggt 60
Query: 68 atccatctg 76
|||||||||
Sbjct: 61 atccatctg 69
>25849_xtr-mir-363:mirbase
Length = 87
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 14 cgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggtatccat 73
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttagtttggtaggagaaaaattgcacggtatccat 72
Query: 74 ctgtaaaccgca 85
||||||||||||
Sbjct: 73 ctgtaaaccgca 84
>25850_xtr-mir-363:mirbase
Length = 87
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 14 cgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggtatccat 73
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttagtttggtaggagaaaaattgcacggtatccat 72
Query: 74 ctgtaaaccgca 85
||||||||||||
Sbjct: 73 ctgtaaaccgca 84
>32882_rno-mir-363:mirbase
Length = 87
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 2 ttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattg 61
|||||||||| |||||||||||||||||||||||||||||| || | ||||| ||||||
Sbjct: 1 ttttgctgttatcgggtggatcacgatgcaattttgattagagtaatgggagagaaattg 60
Query: 62 cacggtatccatctgtaaaccgca 85
||||||||||||||||||||||||
Sbjct: 61 cacggtatccatctgtaaaccgca 84
>28600_hsa-mir-363:mirbase
Length = 75
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 8 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 67
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 1 tgttgtcgggtggatcacgatgcaattttgatgagtatcataggagaaaaattgcacggt 60
Query: 68 atccatctgtaaacc 82
|||||||||||||||
Sbjct: 61 atccatctgtaaacc 75
>27444_mdo-mir-363:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 85/90 (94%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 2 ttttgctgttgtcgggtggatcacgatgcaa-ttttgattagtttagtaggagaaaa-at 59
||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||| ||
Sbjct: 1 ttttgctgt-gtcgggtggatcacgatgcaaattttgataagtttaataggagaaaaaat 59
Query: 60 tgcacggtatccatctgtaaaccgcaagac 89
||||||||||||||||||||||||||||||
Sbjct: 60 tgcacggtatccatctgtaaaccgcaagac 89
>26813_cfa-mir-363:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 13 tcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 1 tcgggtggatcacgatgcaattttgatgagtataataggagaaaaattgcacggtatcca 60
Query: 73 tctgtaa 79
|||||||
Sbjct: 61 tctgtaa 67
>25670_xla-mir-363:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 cgggtggatcacgatgcaattttgatta-gtttagtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
Query: 73 tctgtaaaccgca 85
|||||||||||||
Sbjct: 73 tctgtaaaccgca 85
>32034_mmu-mir-363:mirbase
Length = 75
Score = 85.7 bits (43), Expect = 5e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 16 ggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggtatccatct 75
|||||| ||||||||||||||| || || || |||||| |||||||||||||||||||||
Sbjct: 9 ggtggaacacgatgcaattttggttggtgtaataggaggaaaattgcacggtatccatct 68
Query: 76 gtaaacc 82
|||||||
Sbjct: 69 gtaaacc 75
>32035_mmu-mir-363:mirbase
Length = 75
Score = 85.7 bits (43), Expect = 5e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 16 ggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggtatccatct 75
|||||| ||||||||||||||| || || || |||||| |||||||||||||||||||||
Sbjct: 9 ggtggaacacgatgcaattttggttggtgtaataggaggaaaattgcacggtatccatct 68
Query: 76 gtaaacc 82
|||||||
Sbjct: 69 gtaaacc 75
>34393_dre-mir-363:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 aaaaattgcacggtatccatctgtaaaccgc 84
|||||||||||||||||||||||||| ||||
Sbjct: 75 aaaaattgcacggtatccatctgtaatccgc 105
