miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26024_gga-mir-375:mirbase
Length = 65
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 cctggcgtcgagccccacgtgcaatacctgacctgaacgttttgttcgttcggctcgcgt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcgtcgagccccacgtgcaagacctgacctgaacgttttgttcgttcggctcgcgt 60
Query: 61 taggc 65
|||||
Sbjct: 61 taggc 65
>26822_cfa-mir-375:mirbase
Length = 70
Score = 61.9 bits (31), Expect = 5e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggcagg 68
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 30 gacctgagcgttttgttcgttcggctcgcgtgaggcagg 68
>32888_rno-mir-375:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 5e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggcagg 68
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 34 gacctgagcgttttgttcgttcggctcgcgtgaggcagg 72
>25853_xtr-mir-375:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 36 aacgttttgttcgttcggctcgcgttaggcaggt 69
||||||||||||||||||||||||||| ||||||
Sbjct: 36 aacgttttgttcgttcggctcgcgttaagcaggt 69
>27447_mdo-mir-375:mirbase
Length = 63
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 28 gacctgagcgttttgttcgttcggctcgcgtgaggc 63
>27878_mml-mir-375:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
>28616_hsa-mir-375:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
>30979_ppy-mir-375:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
>32044_mmu-mir-375:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
||||||| ||||||||||||||||||||||| ||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
>24704_bfl-mir-375:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 36 aacgttttgttcgttcggctcgcgtta 62
|||||||||||||||||||||||||||
Sbjct: 56 aacgttttgttcgttcggctcgcgtta 82
>30352_ptr-mir-375:mirbase
Length = 63
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgt 60
||||||| |||||||||||||||||||||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgt 59
>34651_fru-mir-375:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttaggcaggt 69
|||||||||||||||||||||||| ||||||
Sbjct: 47 gttttgttcgttcggctcgcgttatgcaggt 77
>34799_tni-mir-375:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttaggcaggt 69
|||||||||||||||||||||||| ||||||
Sbjct: 47 gttttgttcgttcggctcgcgttatgcaggt 77
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttaggcag 67
|||||||||||||||||||||||| ||||
Sbjct: 50 gttttgttcgttcggctcgcgttacgcag 78
>38887_lgi-mir-375:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgtta 62
||||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgtta 82
>25543_pma-mir-375a:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 tttgttcgttcggctcgcgttaggcagg 68
|||||||||||||||||||||| |||||
Sbjct: 59 tttgttcgttcggctcgcgttacgcagg 86
>25544_pma-mir-375b:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 cgttttgttcgttcggctcgcgtt 61
||||||||||||||||||||||||
Sbjct: 56 cgttttgttcgttcggctcgcgtt 79
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgtta 62
||||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgtta 70
>34837_spu-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgt 60
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
>34988_isc-mir-375:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttag 63
||||||||||||||||||| |||||
Sbjct: 59 gttttgttcgttcggctcgagttag 83
>38778_cte-mir-375:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgtta 62
||||||||||| ||||||||||||
Sbjct: 59 gttttgttcgtccggctcgcgtta 82
>34898_sko-mir-375:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 36 aacgttttgttcgttcggctcgcg 59
|||| |||||||||||||||||||
Sbjct: 49 aacgctttgttcgttcggctcgcg 72
>24855_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ttgttcgttcggctcgcgt 60
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
>24856_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ttgttcgttcggctcgcgt 60
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
