miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25854_xtr-mir-383:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggcttttagtagatattaagcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>26025_gga-mir-383:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtaaatattgagcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>34086_ssc-mir-383:mirbase
Length = 82
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 cctgctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcac 60
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct: 1 cctgctcctcagatcagaaggtgattgtggctttgggtagatattaatcagccacagcac 60
Query: 61 tgcctggtcaga 72
||||||||||||
Sbjct: 61 tgcctggtcaga 72
>27165_eca-mir-383:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>27889_mml-mir-383:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>28636_hsa-mir-383:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>30363_ptr-mir-383:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>30990_ppy-mir-383:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>31550_oan-mir-383:mirbase
Length = 119
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 cctgctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcac 60
||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||
Sbjct: 22 cctgctcctcagatcagaaggtgattgtggctttgggtagctactaagcagccacaacac 81
Query: 61 tgcctggtcaga 72
||||||||||||
Sbjct: 82 tgcctggtcaga 93
>33360_bta-mir-383:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 5 ctcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcc 64
||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||
Sbjct: 1 ctcctcagatcagaaggtgattgtggctttgggtggatatcaatcagccacagcactgcc 60
Query: 65 tggtcaga 72
||||||||
Sbjct: 61 tggtcaga 68
>32899_rno-mir-383:mirbase
Length = 74
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 6 tcctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcct 65
||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||
Sbjct: 1 tcctcagatcagaaggtgactgtggctttgggtggatattaatcagccacagcactgcct 60
Query: 66 ggtcaga 72
|||||||
Sbjct: 61 ggtcaga 67
>26834_cfa-mir-383:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 11 agatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcctggtca 70
||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 1 agatcagaaggtgattgtggctttgggtggatattaatcagccacagcactgcctggtca 60
Query: 71 ga 72
||
Sbjct: 61 ga 62
>32056_mmu-mir-383:mirbase
Length = 70
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 8 ctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcctgg 67
||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||
Sbjct: 1 ctcagatcagaaggtgactgtggctttgggtggatattaatcagccacagcactgcctgg 60
Query: 68 tcaga 72
|||||
Sbjct: 61 tcaga 65
>27448_mdo-mir-383:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 8e-10
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 8 ctcagatcagaaggtgattgtggctttgagtaaatattaagcagccacagcactgcctgg 67
||||||||||||||||||||||||||| ||| | || | |||||||| ||||| ||||
Sbjct: 1 ctcagatcagaaggtgattgtggctttcggtagacatggaacagccacatcactggctgg 60
Query: 68 tcaga 72
|||||
Sbjct: 61 tcaga 65
