miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26530_tgu-mir-425:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gagagatggctttggaatgacacgatcactcccgctgagccagcagccagagagccatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagagatggctttggaatgacacgatcactcccgctgagccagcagccagagagccatcg 60
Query: 61 gggatgtcgtgtctttccaaagctctttc 89
|||||||||||||||||||||||||||||
Sbjct: 61 gggatgtcgtgtctttccaaagctctttc 89
>31551_oan-mir-425:mirbase
Length = 103
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| ||||| |||||| |||||||||| || ||
Sbjct: 13 gctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggaatatc 72
Query: 69 gtgtctttccaaagctctttc 89
||||| ||||||||||||||
Sbjct: 73 gtgtccgtccaaagctctttc 93
>27449_mdo-mir-425:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| ||||| |||||| |||||||||| || ||
Sbjct: 6 gctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggaatatc 65
Query: 69 gtgtctttccaaagctcttt 88
||||| ||||| |||||||
Sbjct: 66 gtgtccgtccaatgctcttt 85
>32068_mmu-mir-425:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 6 gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 65
Query: 69 gtgtc 73
|||||
Sbjct: 66 gtgtc 70
>33370_bta-mir-425:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 66
Query: 69 gtgtc 73
|||||
Sbjct: 67 gtgtc 71
>33371_bta-mir-425:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 66
Query: 69 gtgtc 73
|||||
Sbjct: 67 gtgtc 71
>34092_ssc-mir-425:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 5 gctttggaatgacacgatcactcccgttgagtgggcacccaagtagccatcgggaatgtc 64
Query: 69 gtgtc 73
|||||
Sbjct: 65 gtgtc 69
>34093_ssc-mir-425:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 5 gctttggaatgacacgatcactcccgttgagtgggcacccaagtagccatcgggaatgtc 64
Query: 69 gtgtc 73
|||||
Sbjct: 65 gtgtc 69
>27901_mml-mir-425:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgag 37
>28648_hsa-mir-425:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgag 37
>30372_ptr-mir-425:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgag 37
>31002_ppy-mir-425:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 7 gctttggaatgacacgatcactcccgttgag 37
>32909_rno-mir-425:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 4 gctttggaatgacacgatcactcccgttgag 34
>25855_xtr-mir-425:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttggaatgacacgatcactcccgctgagcc 41
||||||||||||||||||||||| ||||||
Sbjct: 4 ttggaatgacacgatcactcccgttgagcc 33
>26842_cfa-mir-425:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 16 aatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtcgtgtc 73
||||||||||||||||||| |||| ||| ||| |||||||||| ||||||||||
Sbjct: 1 aatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtcgtgtc 58
