miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26031_gga-mir-454:mirbase
Length = 121
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttttgtgatcagggtagtagtgcaatattgcttatag 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 32 gaccctatcaatattgcctctgcttttgtgctcagggtagtagtgcaatattgcttatag 91
Query: 61 ggtcttttctttt 73
|||||||||||||
Sbjct: 92 ggtcttttctttt 104
>34475_dre-mir-454b:mirbase
Length = 116
Score = 58.0 bits (29), Expect = 9e-10
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttttgtga----tcagggtagtagtgcaatattgctt 56
||||||||||||||||||||||||||| | | | | || ||||||||||||||||||
Sbjct: 23 gaccctatcaatattgcctctgcttttctcactgtttatgg-agtagtgcaatattgctt 81
Query: 57 atagggtctt 66
||||||||||
Sbjct: 82 atagggtctt 91
>26852_cfa-mir-454:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 42 agtagtgcaatattgcttatagggt 66
>27187_eca-mir-454:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 42 agtagtgcaatattgcttatagggt 66
>27916_mml-mir-454:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 accctatcaatattgcctctgct 24
||||||||||||||| |||||||
Sbjct: 24 accctatcaatattgtctctgct 46
>28664_hsa-mir-454:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 accctatcaatattgcctctgct 24
||||||||||||||| |||||||
Sbjct: 24 accctatcaatattgtctctgct 46
>30385_ptr-mir-454:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 accctatcaatattgcctctgct 24
||||||||||||||| |||||||
Sbjct: 24 accctatcaatattgtctctgct 46
>31557_oan-mir-454:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 54 agtagtgcaatattgcttatagggt 78
>33386_bta-mir-454:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 61 agtagtgcaatattgcttatagggt 85
>34474_dre-mir-454a:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
||||||||||||||||| |||||||
Sbjct: 75 agtagtgcaatattgctaatagggt 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgct 24
|||||||||| |||||||||||||
Sbjct: 36 gaccctatcagtattgcctctgct 59
