miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25863_xtr-mir-455:mirbase
Length = 87
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>26032_gga-mir-455:mirbase
Length = 86
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>26033_gga-mir-455:mirbase
Length = 86
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>34476_dre-mir-455:mirbase
Length = 96
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>34653_fru-mir-455:mirbase
Length = 84
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 71
Query: 61 acttgcctca 70
||||||||||
Sbjct: 72 acttgcctca 81
>27453_mdo-mir-455:mirbase
Length = 87
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcccttggactacatcgtggaagccaacaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>27917_mml-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>27918_mml-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>28665_hsa-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>28666_hsa-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>30386_ptr-mir-455:mirbase
Length = 95
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 71
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 72 acttgcctcaa 82
>31017_ppy-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>31018_ppy-mir-455:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>33387_bta-mir-455:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 73 acttgcctcaa 83
>34103_ssc-mir-455:mirbase
Length = 80
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 68
Query: 61 acttgcctcaa 71
|||||||||||
Sbjct: 69 acttgcctcaa 79
>34801_tni-mir-455:mirbase
Length = 84
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 71
Query: 61 acttgcctcaa 71
|||| ||||||
Sbjct: 72 actttcctcaa 82
>34477_dre-mir-455b:mirbase
Length = 105
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 21 gggtatgtgcccttggactacattgtggaggccagcaccatgcagtccatgggcatatac 80
Query: 61 actt 64
||||
Sbjct: 81 actt 84
>26853_cfa-mir-455:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 4 tatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 58
>32920_rno-mir-455:mirbase
Length = 78
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 gtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatacac 62
||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct: 10 gtatgtgcctttggactacatcgtggacgc-agcaccatgcagtccacgggcatatacac 68
Query: 63 ttgcctcaa 71
|||||||||
Sbjct: 69 ttgcctcaa 77
>32088_mmu-mir-455:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 9e-19
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 3 gtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatacac 62
||||||||| ||||||||||||||| | || |||||||||||||||| ||||||||||||
Sbjct: 16 gtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtccacgggcatatacac 74
Query: 63 ttgcctca 70
||||||||
Sbjct: 75 ttgcctca 82
