miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26035_gga-mir-458:mirbase
Length = 116
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 1 ggtgccgatgacagcgccatttccagagctatcaacagtgtcattgtcatagctcttgga 60
||||| |||| ||||||||||| ||||||||| ||||| |||||||||||||||||| ||
Sbjct: 18 ggtgcagatggcagcgccattttcagagctataaacagcgtcattgtcatagctctttga 77
Query: 61 atggttctgccata 74
||||| ||||||||
Sbjct: 78 atggtactgccata 91
>31558_oan-mir-458:mirbase
Length = 117
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 ggtgccgatgacagcgccatttccagagctatcaacagtgtcattgtcatagctcttgga 60
||||| |||| ||||||||||| ||||||||| |||||| |||||| |||||||||| ||
Sbjct: 20 ggtgcagatggcagcgccattttcagagctataaacagtatcattgccatagctctttga 79
Query: 61 atggttctgccata 74
||||| ||||||||
Sbjct: 80 atggtactgccata 93
>34481_dre-mir-458:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 44 ttgtcatagctcttggaatggttctgccataagcac 79
|||||||||||||| ||||||| |||||||| ||||
Sbjct: 43 ttgtcatagctctttgaatggtactgccatatgcac 78
>34654_fru-mir-458:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 cagcgccatttccagagctatca 34
||||||||||| |||||||||||
Sbjct: 10 cagcgccattttcagagctatca 32
>34802_tni-mir-458:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 cagcgccatttccagagctatca 34
||||||||||| |||||||||||
Sbjct: 11 cagcgccattttcagagctatca 33
