miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26036_gga-mir-460a:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 4 tatagcacctgcattgtacacactgtgtgtgtgg-ctggaaatgcacagcgcatacaatg 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8 tatagcacctgcattgtacacactgtgtgtgttaactggaaatgcacagcgcatacaatg 67
Query: 63 tggattctgtacaagtc 79
||||||||||| |||||
Sbjct: 68 tggattctgtagaagtc 84
>27454_mdo-mir-460:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 ctttatagcacctgcattgtacacactgtgtgtgtggctggaaatgcacagcgcatacaa 60
|||||||| |||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 5 ctttatagaacctgcattgtacacactgtgtgttttcattcccatgcacagcgcatacaa 64
Query: 61 tgtggat 67
|||||||
Sbjct: 65 tgtggat 71
>31559_oan-mir-460:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 tatagcacctgcattgtacacactgtgtgt 33
||||| ||||||||||||||||||||||||
Sbjct: 7 tatagaacctgcattgtacacactgtgtgt 36
>34483_dre-mir-460:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 39 tggaaatgcacagcgcatacaatgtggattctgt 72
|||| |||||||||||||||||||||||| ||||
Sbjct: 40 tggacatgcacagcgcatacaatgtggatgctgt 73
>34484_dre-mir-460:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 39 tggaaatgcacagcgcatacaatgtggattctgt 72
|||| |||||||||||||||||||||||| ||||
Sbjct: 40 tggacatgcacagcgcatacaatgtggatgctgt 73
>34655_fru-mir-460:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 gcacagcgcatacaatgtggattctgt 72
|||||||||||||||||||||| ||||
Sbjct: 42 gcacagcgcatacaatgtggatgctgt 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtg 30
||||||||||||||||||||
Sbjct: 6 cctgcattgtacacactgtg 25
>34803_tni-mir-460:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 gcacagcgcatacaatgtggattctgt 72
|||||||||||||||||||||| ||||
Sbjct: 42 gcacagcgcatacaatgtggatgctgt 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtg 30
||||||||||||||||||||
Sbjct: 6 cctgcattgtacacactgtg 25
