miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26040_gga-mir-489:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 60
Query: 67 tatgtacggctgctaaactgctgc 90
||||||||||||||||||||||||
Sbjct: 61 tatgtacggctgctaaactgctgc 84
>25864_xtr-mir-489:mirbase
Length = 84
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1 gtggtggcttagtggtcgtatgtatgacgtcatttactggattttttaggagtgacatca 60
Query: 67 tatgtacggctgctaaactgctgc 90
||||||||||||||||||||||||
Sbjct: 61 tatgtacggctgctaaactgctgc 84
>34487_dre-mir-489:mirbase
Length = 104
Score = 111 bits (56), Expect = 9e-26
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
|||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatca 69
Query: 67 tatgtacggctgctaaactgctgcatgg 94
|||||||||||||||||||||| |||||
Sbjct: 70 tatgtacggctgctaaactgctacatgg 97
>34656_fru-mir-489:mirbase
Length = 102
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
|||||||||||||||||||||| |||||||||||||||| || | | ||||||||||||
Sbjct: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcga-tgattggagtgacatca 71
Query: 67 tatgtacggctgctaaactgct 88
||||||||||||||||||||||
Sbjct: 72 tatgtacggctgctaaactgct 93
>28678_hsa-mir-489:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 6e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| ||||| |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
Query: 73 cggctgctaaactgct 88
|||| |||||||||||
Sbjct: 67 cggcagctaaactgct 82
>30393_ptr-mir-489:mirbase
Length = 83
Score = 95.6 bits (48), Expect = 6e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| ||||| |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
Query: 73 cggctgctaaactgct 88
|||| |||||||||||
Sbjct: 67 cggcagctaaactgct 82
>34804_tni-mir-489:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 9e-20
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
|||||||| ||||||||||||| |||||||||||||||| || | | ||||||||||||
Sbjct: 3 gtggtggcctggtggtcgtatgcatgacgtcatttacttcga-tgattggagtgacatca 61
Query: 67 tatgtacggctgctaaac 84
||||||||||||||||||
Sbjct: 62 tatgtacggctgctaaac 79
>31026_ppy-mir-489:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || || |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatata 66
Query: 73 cggctgctaaactgct 88
|||| |||||||||||
Sbjct: 67 cggcagctaaactgct 82
>27927_mml-mir-489:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || || |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatata 66
Query: 73 cggctgctaaactg 86
|||| |||||||||
Sbjct: 67 cggcagctaaactg 80
>26859_cfa-mir-489:mirbase
Length = 84
Score = 79.8 bits (40), Expect = 3e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||| ||||||| || || |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggccgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatata 66
Query: 73 cggctgctaaactgct 88
|||| |||||||||||
Sbjct: 67 cggcggctaaactgct 82
>27195_eca-mir-489:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggact-tttaggagtgacatcatatgt 71
||||||||||||||||| || || |||||| ||| | |||||||||||||||| || |
Sbjct: 7 gcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatcacatat 66
Query: 72 acggctgctaaactgct 88
||||| |||||||||||
Sbjct: 67 acggcggctaaactgct 83
>33395_bta-mir-489:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || || ||| |||| | || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatcacatata 66
Query: 73 cggctgctaaactgct 88
||| ||||||||||
Sbjct: 67 tggcgactaaactgct 82
