miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26540_tgu-mir-490-1:mirbase
Length = 93
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 tcatgagttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacac 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tcatgagttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacac 60
Query: 61 caacctggaggactccatgctgtcgagctgttc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 caacctggaggactccatgctgtcgagctgttc 93
>26041_gga-mir-490:mirbase
Length = 93
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 61
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 62 tggaggactccatgctgttgagctgttc 89
>27928_mml-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>27929_mml-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>28679_hsa-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>28680_hsa-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>30394_ptr-mir-490:mirbase
Length = 127
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 22 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 79
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 80 tggaggactccatgctgttgagctgttc 107
>31027_ppy-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>31028_ppy-mir-490:mirbase
Length = 128
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>33396_bta-mir-490:mirbase
Length = 127
Score = 113 bits (57), Expect = 2e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 22 agttcattgttcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacc 79
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 80 tggaggactccatgctgttgagctgttc 107
>26860_cfa-mir-490:mirbase
Length = 81
Score = 101 bits (51), Expect = 9e-23
Identities = 72/78 (92%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 3 agttcattgttcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacc 60
Query: 66 tggaggactccatgctgt 83
||||||||||||||||||
Sbjct: 61 tggaggactccatgctgt 78
>31560_oan-mir-490:mirbase
Length = 124
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/85 (90%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
|||||| | |||||| |||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 14 agttcacggttcgacgccatggatctccaggtgggtcaaggtta--gagacgcaccaacc 71
Query: 66 tggaggactccatgctgtcgagctg 90
|||||||||||||||||||||||||
Sbjct: 72 tggaggactccatgctgtcgagctg 96
>27196_eca-mir-490:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/68 (94%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 16 tcgacaccatggatctccaggtgggtcaagattatagagatacaccaacctggaggactc 75
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacctggaggactc 58
Query: 76 catgctgt 83
||||||||
Sbjct: 59 catgctgt 66
>27197_eca-mir-490:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/68 (94%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 16 tcgacaccatggatctccaggtgggtcaagattatagagatacaccaacctggaggactc 75
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacctggaggactc 58
Query: 76 catgctgt 83
||||||||
Sbjct: 59 catgctgt 66
>32179_mmu-mir-490:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 6 agttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaacc 63
Query: 66 tggaggactccatgctgt 83
||||||||||||||||||
Sbjct: 64 tggaggactccatgctgt 81
>32180_mmu-mir-490:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 6 agttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaacc 63
Query: 66 tggaggactccatgctgt 83
||||||||||||||||||
Sbjct: 64 tggaggactccatgctgt 81
>32934_rno-mir-490:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 6 agttcattgttcgacaccatggatctccaggtgggtcacg--tttagatatacaccaacc 63
Query: 66 tggaggactccatgctgt 83
||||||||||||||||||
Sbjct: 64 tggaggactccatgctgt 81
>34108_ssc-mir-490:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 5e-18
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 ttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacctggaggact 74
|||||||||||||||| |||||||||||| | | | ||||||||||||||||||||||
Sbjct: 4 ttcgacaccatggatccccaggtgggtcacg--tttcaagatacaccaacctggaggact 61
Query: 75 ccatgctgtcgagctgtt 92
||||||||| ||||||||
Sbjct: 62 ccatgctgttgagctgtt 79
