miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27458_mdo-mir-551b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
|||||||||| ||||| |||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 6 gaaatcaaggatgggtgagacctcgtgtgcaaactgaaaggcgacccatacttggtttca 65
Query: 61 ggggct 66
||||||
Sbjct: 66 ggggct 71
>26043_gga-mir-551:mirbase
Length = 113
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
||||||||||||||||||||||| || | |||| ||||||||||||||||||||||
Sbjct: 26 gaaatcaagggtgggtaagaccttgtaggataactggcaggcgacccatacttggtttca 85
Query: 61 ggggctgtg 69
|||||||||
Sbjct: 86 ggggctgtg 94
>31562_oan-mir-551:mirbase
Length = 93
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggct 66
|||||||||||||||||||||||||||||
Sbjct: 55 aaggcgacccatacttggtttcaggggct 83
>28864_hsa-mir-551b:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctgtg 69
|||||||||||||||||||||||| |||||||
Sbjct: 58 aaggcgacccatacttggtttcagaggctgtg 89
>31135_ppy-mir-551b:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctgtg 69
|||||||||||||||||||||||| |||||||
Sbjct: 58 aaggcgacccatacttggtttcagaggctgtg 89
>33420_bta-mir-551b:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctgtg 69
|||||||||||||||||||||||| |||||||
Sbjct: 58 aaggcgacccatacttggtttcagaggctgtg 89
>26881_cfa-mir-551b:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 54 aaggcgacccatacttggtttcagaggctg 83
>28006_mml-mir-551b:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 58 aaggcgacccatacttggtttcagaggctg 87
>30493_ptr-mir-551b:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 57 aaggcgacccatacttggtttcagaggctg 86
>32213_mmu-mir-551b:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 54 aaggcgacccatacttggtttcagtggctg 83
>32957_rno-mir-551b:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 54 aaggcgacccatacttggtttcagtggctg 83
>27234_eca-mir-551b:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcag 61
||||||||||||||||||||||||
Sbjct: 39 aaggcgacccatacttggtttcag 62
>25555_pma-mir-551:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 aggcgacccatacttggtttca 60
||||||||||||||||||||||
Sbjct: 47 aggcgacccatacttggtttca 68
