miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26353_gga-mir-2188:mirbase
Length = 169
Score = 295 bits (149), Expect = 5e-81
Identities = 164/169 (97%)
Strand = Plus / Plus
Query: 1 gaggttagatggcactttggggtttccttctgaggaatatcagacctgtgggaaaggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggttagatggcactttggggtttccttctgaggaatatcagacctgtgggaaaggtcc 60
Query: 61 aacctcacatgtcctgtatagaataaagagggatatatgtggtcagacctatcccacaag 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 61 aacctcacatgtcctgtatagaataaggagggatatatgtggtcagacctatcccacagg 120
Query: 121 tcctgtattcttactcaagttcagagaccttgacatgccatctgatctt 169
||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 121 ccctgtattcttacacaagtgcagagaccttgacatgccatctgatctt 169
>34513_dre-mir-2188:mirbase
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 tgtgggaaaggtccaacctcacatgtcctgt 77
|||| ||||||||||||||||||||||||||
Sbjct: 16 tgtgagaaaggtccaacctcacatgtcctgt 46
>25867_xtr-mir-2188:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 tgtgggaaaggtccaacctcacatgtcctgt 77
||||||||||||||| ||||| |||||||||
Sbjct: 6 tgtgggaaaggtccagcctcatatgtcctgt 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 gggatatatgtggtcagacctatcccaca 118
|||| |||||||||||||||| |||||||
Sbjct: 47 gggagatatgtggtcagacctgtcccaca 75
