miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 6 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 65
Query: 63 cccttccggcacagg 77
|||||| ||||||||
Sbjct: 66 cccttctggcacagg 80
>27657_mml-mir-18b:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 cccttccggca 73
|||||| ||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 cccttccggca 73
|||||| ||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 cccttccggca 73
|||||| ||||
Sbjct: 61 cccttctggca 71
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 ccc 65
|||
Sbjct: 61 ccc 63
>31432_oan-mir-18:mirbase
Length = 130
Score = 105 bits (53), Expect = 4e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 24 tgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgc 83
Query: 63 cccttccggcaca 75
||||| ||||||
Sbjct: 84 tccttctggcaca 96
>33135_bta-mir-18b:mirbase
Length = 75
Score = 105 bits (53), Expect = 4e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
Query: 63 cccttccggcaca 75
||||| ||||||
Sbjct: 63 tccttctggcaca 75
>26951_eca-mir-18b:mirbase
Length = 59
Score = 101 bits (51), Expect = 7e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccct 66
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccct 59
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 101 bits (51), Expect = 7e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||
Sbjct: 6 tgtgttaaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatgc 65
Query: 63 cccttccggcacagg 77
|||||| |||||||
Sbjct: 66 cccttctcgcacagg 80
>25900_gga-mir-18b:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||
Sbjct: 10 tgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgc 69
Query: 63 cccttccggcaca 75
||||| ||||||
Sbjct: 70 tccttctggcaca 82
>25656_xla-mir-18:mirbase
Length = 79
Score = 69.9 bits (35), Expect = 2e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||
Sbjct: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
Query: 63 cccttccggcacagg 77
|||| ||||||||
Sbjct: 64 tccttttggcacagg 78
>34211_dre-mir-18a:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||| ||||||||||||||||||| |||||||| | ||| |||||||||||||| |||
Sbjct: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
Query: 63 cccttccggcac 74
||||| |||||
Sbjct: 66 tccttctggcac 77
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtga 33
|||||||||||||||||||||||||||||||
Sbjct: 4 tgtgttaaggtgcatctagtgcagttagtga 34
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtga 33
|||||||||||||||||||||||||||||||
Sbjct: 96 tgtgttaaggtgcatctagtgcagttagtga 126
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ccggca 73
| ||||
Sbjct: 74 ctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ccggca 73
| ||||
Sbjct: 74 ctggca 79
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ccggca 73
| ||||
Sbjct: 74 ctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 7 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 66
Query: 68 ccggca 73
| ||||
Sbjct: 67 ctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ccggca 73
| ||||
Sbjct: 66 ctggca 71
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ccggca 73
| ||||
Sbjct: 74 ctggca 79
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 9e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
Query: 68 c 68
|
Sbjct: 71 c 71
>26950_eca-mir-18a:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 9e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 68 c 68
|
Sbjct: 61 c 61
>34550_fru-mir-18:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||| ||||||||||||||||||| ||||||| | ||| |||||||||||||| |||
Sbjct: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
Query: 63 cccttccggca 73
||||| ||||
Sbjct: 62 tccttctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
|||| ||||||||||||||||||| ||||||| | ||| |||||||||||||| |||
Sbjct: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
Query: 63 cccttccggca 73
||||| ||||
Sbjct: 62 tccttctggca 72
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | ||| | |||||||||||| ||| ||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 68 ccggca 73
| ||||
Sbjct: 77 ctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
||||||||||||||||||| |||||||| | ||| | |||||||||||| ||| ||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 68 ccggca 73
| ||||
Sbjct: 77 ctggca 82
>34212_dre-mir-18b:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
|||||||||| |||||||| ||||||| | ||| |||||||||||||| ||||||||
Sbjct: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
Query: 68 ccggca 73
| ||||
Sbjct: 73 ctggca 78
>25433_pma-mir-18a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagt 31
|||| ||||||||||||||||||| ||||
Sbjct: 13 tgtgctaaggtgcatctagtgcagatagt 41
>34213_dre-mir-18c:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaag 35
|||||||||||| ||| |||||||||||
Sbjct: 11 taaggtgcatcttgtgtagttagtgaag 38
