miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 123 bits (62), Expect = 1e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>26961_eca-mir-24:mirbase
Length = 68
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 cgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcaggaaca 64
Query: 61 gg 62
||
Sbjct: 65 gg 66
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>28270_ggo-mir-24:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
Query: 61 gg 62
||
Sbjct: 71 gg 72
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 81.8 bits (41), Expect = 5e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 2 gtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaacag 61
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 8 gtgcctactgagctgaaacacagttgctttggataaactggctcagttcagcaggaacag 67
Query: 62 g 62
|
Sbjct: 68 g 68
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 24 cgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcaggaaca 81
Query: 61 gg 62
||
Sbjct: 82 gg 83
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 70 cgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcaggaaca 13
Query: 61 gg 62
||
Sbjct: 12 gg 11
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 70 cgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcaggaaca 13
Query: 61 gg 62
||
Sbjct: 12 gg 11
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 4e-08
Identities = 53/61 (86%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 2 gtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaacag 61
|||||||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct: 25 gtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcaggaacag 82
Query: 62 g 62
|
Sbjct: 83 g 83
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 gactggctcagttcagcaggaacagg 62
||||||||||||||||||||||||||
Sbjct: 48 gactggctcagttcagcaggaacagg 73
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>25908_gga-mir-24:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>26413_tgu-mir-24:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 99 actggctcagttcagcaggaacagg 123
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 33 actggctcagttcagcaggaacagg 9
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 33 actggctcagttcagcaggaacagg 9
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>31442_oan-mir-24:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 50 actggctcagttcagcaggaacagg 74
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacagg 11
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacagg 11
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>33024_rno-mir-3074:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 24
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 50 actggctcagttcagcaggaacagg 74
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 47 actggctcagttcagcaggaacagg 71
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 78 actggctcagttcagcaggaacagg 102
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagg 76
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagg 76
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacagg 62
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>25444_pma-mir-24:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcaggaacag 61
||||||||||||||||||||||||
Sbjct: 56 actggctcagttcagcaggaacag 79
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ctggctcagttcagcaggaacagg 62
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ctggctcagttcagcaggaacagg 62
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ctggctcagttcagcaggaacagg 62
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 actggctcagttcagcagga 57
||||||||||||||||||||
Sbjct: 38 actggctcagttcagcagga 57
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 39 ctggctcagttcagcagga 57
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 39 ctggctcagttcagcagga 57
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62