miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26976_eca-mir-30c:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>27683_mml-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>28393_hsa-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>30179_ptr-mir-30c-1:mirbase
          Length = 88

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 75

           
Query: 61 c 61
          |
Sbjct: 76 c 76

>30784_ppy-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>31808_mmu-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>32690_rno-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>33167_bta-mir-30c:mirbase
          Length = 105

 Score =  113 bits (57), Expect = 1e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttactc 85

           
Query: 61 c 61
          |
Sbjct: 86 c 86

>33942_ssc-mir-30c-1:mirbase
          Length = 80

 Score =  113 bits (57), Expect = 1e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttactc 69

           
Query: 61 c 61
          |
Sbjct: 70 c 70

>25918_gga-mir-30c-1:mirbase
          Length = 89

 Score = 91.7 bits (46), Expect = 5e-20
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                    
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttac 58
          |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttac 74

>25734_xtr-mir-30c-1:mirbase
          Length = 89

 Score = 81.8 bits (41), Expect = 5e-17
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
          |||||||||||||||||||||||||||| |  ||||||||||||||| || |||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaacataaggtggctgggagaagggtgtttactc 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>31809_mmu-mir-30c-2:mirbase
          Length = 84

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  tgtaaacatcctacactctcagctgtga 28
          ||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41

>32691_rno-mir-30c-2:mirbase
          Length = 84

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  tgtaaacatcctacactctcagctgtga 28
          ||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41

>25735_xtr-mir-30c-2:mirbase
          Length = 78

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtg 40

>25919_gga-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>26425_tgu-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27

>26426_tgu-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27

>26656_cfa-mir-30c-2:mirbase
          Length = 62

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27

>26977_eca-mir-30c-2:mirbase
          Length = 60

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27

>27556_lla-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>27684_mml-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>28192_mne-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>28394_hsa-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>30180_ptr-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33

>33943_ssc-mir-30c-2:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36

>31452_oan-mir-30c:mirbase
          Length = 122

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  tgtaaacatcctacactctcagctgt 26
          ||||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgt 56

>25462_pma-mir-30g:mirbase
          Length = 83

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 1  tgtaaacatcctacactctcagctgtgag 29
          |||||||||||| ||||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtgag 40

>34249_dre-mir-30c:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  tgtaaacatcctacactctcagctg 25
          |||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35

>25460_pma-mir-30f-1:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36

>33170_bta-mir-30f:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  tgtaaacatcctacactctcagctgtg 27
          |||||||| ||||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtg 40

>25461_pma-mir-30f-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  tgtaaacatcctacactctcagctg 25
          |||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35

>34248_dre-mir-30b:mirbase
          Length = 88

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                         
Query: 1  tgtaaacatcctacactctcagctgtgagct 31
          |||||||||||||||  ||||||||||||||
Sbjct: 16 tgtaaacatcctaca--ctcagctgtgagct 44

>34574_fru-mir-30c:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgtaaacatcctacactctc 20
          ||||||||||||||||||||
Sbjct: 9  tgtaaacatcctacactctc 28

>34721_tni-mir-30c:mirbase
          Length = 79

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgtaaacatcctacactctc 20
          ||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29