miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27557_lla-mir-34a:mirbase
Length = 111
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcagcaagtatact 81
Query: 61 gcccta 66
||||||
Sbjct: 82 gcccta 87
>27604_sla-mir-34a:mirbase
Length = 111
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcagcaagtatact 81
Query: 61 gcccta 66
||||||
Sbjct: 82 gcccta 87
>25925_gga-mir-34a:mirbase
Length = 109
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 21 tggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagtaatagataaggaagcaatcagcaagtatact 81
Query: 61 gcccta 66
||||||
Sbjct: 82 gcccta 87
>27496_age-mir-34a:mirbase
Length = 111
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgtgcaatagtgaaggaagcaatcagcaagtatact 81
Query: 61 gcccta 66
||||||
Sbjct: 82 gcccta 87
>33175_bta-mir-34a:mirbase
Length = 107
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcagcaagtatact 81
Query: 61 gcccta 66
||||||
Sbjct: 82 gcccta 87
>26984_eca-mir-34:mirbase
Length = 63
Score = 109 bits (55), Expect = 2e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
Query: 61 gcc 63
|||
Sbjct: 61 gcc 63
>26432_tgu-mir-34a:mirbase
Length = 72
Score = 107 bits (54), Expect = 9e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 11 tggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagtatact 70
Query: 61 gc 62
||
Sbjct: 71 gc 72
>27691_mml-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>28197_mne-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>28401_hsa-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 107 bits (54), Expect = 9e-25
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcagcaagtatact 80
Query: 61 gcccta 66
||||||
Sbjct: 81 gcccta 86
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 107 bits (54), Expect = 9e-25
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 20 tggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagtatact 79
Query: 61 gcccta 66
||||||
Sbjct: 80 gcccta 85
>32697_rno-mir-34a:mirbase
Length = 102
Score = 107 bits (54), Expect = 9e-25
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 20 tggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagtatact 79
Query: 61 gcccta 66
||||||
Sbjct: 80 gcccta 85
>33948_ssc-mir-34a:mirbase
Length = 76
Score = 87.7 bits (44), Expect = 8e-19
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagca 52
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7 tggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagca 58
>34253_dre-mir-34:mirbase
Length = 98
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||| | | | | ||| |||||||||||||||||||||
Sbjct: 19 tggcagtgtcttagctggttgttgtgtggagt-gagaacgaagcaatcagcaagtatact 77
Query: 61 gcc 63
|||
Sbjct: 78 gcc 80
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtg 26
||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtcttagctggttgttgtg 41
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 agcaatcagcaagtatactgcccta 66
|||||||||||| ||||||||||||
Sbjct: 57 agcaatcagcaaatatactgcccta 81
