miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33195_bta-mir-106b:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctccgtgctaccgcactgtgggtacttgctg 59
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctgtgtgctaccgcactgtgggtacttgctg 70
>27505_age-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>27614_sla-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>27712_mml-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>28206_mne-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>28298_ggo-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>28424_hsa-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>30085_ppa-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>30205_ptr-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>30812_ppy-mir-106b:mirbase
Length = 82
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>31835_mmu-mir-106b:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtc--ctccgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>32714_rno-mir-106b:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtc--ctccgtgctaccgcactgtgggtacttgct 58
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgtgggtacttgct 71
Query: 59 g 59
|
Sbjct: 72 g 72
>27003_eca-mir-106b:mirbase
Length = 59
Score = 79.8 bits (40), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtc--ctccgtgctaccgcactgtgggtacttgc 57
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct: 1 taaagtgctgacagtgcagatagtggtcctctccatgctaccgcactgtgggtacttgc 59
>27567_lla-mir-106b:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 taaagtgctgacagtgcagatagcggtc-ctccgtgctaccgcactgtgggtacttgctg 59
||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 12 taaagtgctgacagtgcagatagtgtcctctccgtgctaccgcactgtgggtacttgctg 71
