miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32659_rno-mir-16:mirbase
Length = 95
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
Query: 61 attgtgctgctttag 75
|||||||||||||||
Sbjct: 68 attgtgctgctttag 82
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 3 tccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattat 62
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
Query: 63 tgtgctgctttagcgtg 79
|||||||||||||||||
Sbjct: 61 tgtgctgctttagcgtg 77
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gttccactctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
Query: 61 attgtgctgctttag 75
|||||||||||||||
Sbjct: 68 attgtgctgctttag 82
>33131_bta-mir-16b:mirbase
Length = 93
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
Query: 61 attgtgctgctttagcgtg 79
|||||||||||||||||||
Sbjct: 68 attgtgctgctttagcgtg 86
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatatt 60
Query: 61 attgtgctgctttag 75
| |||||||||||||
Sbjct: 61 actgtgctgctttag 75
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattgtgctg 69
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 70 cttta 74
|||||
Sbjct: 61 cttta 65
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 2 ttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatta 61
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
Query: 62 ttgtgctgctttag 75
|||||||||||||
Sbjct: 61 ctgtgctgctttag 74
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 111 bits (56), Expect = 8e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatatt 60
Query: 61 attgtgctgctt 72
| ||||||||||
Sbjct: 61 actgtgctgctt 72
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 111 bits (56), Expect = 8e-26
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattgg-cgtagtgaaataaatattaaacaccaatat 59
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatat 60
Query: 60 tattgtgctgctttag 75
|| |||||||||||||
Sbjct: 61 tactgtgctgctttag 76
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||
Sbjct: 8 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 67
Query: 61 attgtgctgctttagcgtggc 81
|||||||||||| ||||||||
Sbjct: 68 attgtgctgcttaagcgtggc 88
>31429_oan-mir-16b:mirbase
Length = 101
Score = 83.8 bits (42), Expect = 2e-17
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 5 cgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattg 64
||||||||||||||||||||||||| |||||| || | |||||| ||||||||||||
Sbjct: 16 cgctctagcagcacgtaaatattggtgtagtg----aagtcttaaaccccaatattattg 71
Query: 65 tgctgctttagcgtg 79
|||||||||||||||
Sbjct: 72 tgctgctttagcgtg 86
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 63.9 bits (32), Expect = 2e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
||||||| ||||||||||||||||||||| || || ||| ||| || ||| ||||||||
Sbjct: 2 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 60
Query: 61 attgtgctgctt 72
||||||||||||
Sbjct: 61 attgtgctgctt 72
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ctctagcagcacgtaaatattgg 29
|||||||||||||||||||||||
Sbjct: 11 ctctagcagcacgtaaatattgg 33
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>27334_mdo-mir-16:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27480_age-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27589_sla-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28172_mne-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28260_ggo-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30044_ppa-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30753_ppy-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>31428_oan-mir-16a:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattggcgt 51
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattggcgt 38
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgt 31
>27541_lla-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcg 31
||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcg 35
>34206_dre-mir-16a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cgctctagcagcacgtaaatattgg 29
|||| ||||||||||||||||||||
Sbjct: 8 cgctttagcagcacgtaaatattgg 32
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25896_gga-mir-16c:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 gctctagcagcacgtaaata 25
||||||||||||||||||||
Sbjct: 1 gctctagcagcacgtaaata 20
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 gctctagcagcacgtaaata 25
||||||||||||||||||||
Sbjct: 7 gctctagcagcacgtaaata 26
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattgg 29
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
