miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 tcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgct 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tcccgccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgct 64
Query: 65 gttatctggggcgggggccag 85
||||||||||||| |||||||
Sbjct: 65 gttatctggggcgagggccag 85
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggctcccaccctctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 62
Query: 62 gctgttatctgggg 75
||||||||||||||
Sbjct: 63 gctgttatctgggg 76
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 139 bits (70), Expect = 4e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactgattccagtggggct 61
Query: 62 gctgttatctgggg 75
||||||||||||||
Sbjct: 62 gctgttatctgggg 75
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 131 bits (66), Expect = 9e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2 ggctcccgccccctgtaacagcaactccatgtggaagtgtccactgattccagtggggct 61
Query: 62 gctgttatctggggcgggggcc 83
|||||||||||||||| |||||
Sbjct: 62 gctgttatctggggcgagggcc 83
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 117 bits (59), Expect = 1e-27
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 2 ggctcccaccccctgtaacagcaactccatgtggaagt-acctctagttccagtggggct 60
Query: 62 gctgttatctggggcgggggcca 84
|||||||||||||| ||||||||
Sbjct: 61 gctgttatctggggtgggggcca 83
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 cccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctg 65
|||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||
Sbjct: 9 cccaccccttgtaacagcaactccatgtggaagggtctcctggttccagtggagctgctg 68
Query: 66 ttatct 71
||||||
Sbjct: 69 ttatct 74
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 cctgtaacagcaactccatgtggaagt 39
|||||||||||||||||||||||||||
Sbjct: 13 cctgtaacagcaactccatgtggaagt 39
>34345_dre-mir-194a:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggaag 38
>34621_fru-mir-194:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 8 tgtaacagcaactccatgtggaag 31
>34768_tni-mir-194:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtggaag 34
>25514_pma-mir-194:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 17 tgtaacagcaactccatgtgga 38
>25667_xla-mir-194:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>25984_gga-mir-194:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 14 tgtaacagcaactccatgtgga 35
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
>26750_cfa-mir-194:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtgga 22
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27514_age-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28228_mne-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28321_ggo-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>30269_ptr-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>30885_ppy-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 22 tgtaacagcaactccatgtgga 43
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 7 tgtaacagcaactccatgtgga 28
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 21 tgtaacagcaactccatgtgga 42
>34023_ssc-mir-194:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 ctgtaacagcaactccatgtgga 36
|||||||||| ||||||||||||
Sbjct: 10 ctgtaacagcgactccatgtgga 32
>34024_ssc-mir-194:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 ctgtaacagcaactccatgtgga 36
|||||||||| ||||||||||||
Sbjct: 10 ctgtaacagcgactccatgtgga 32
