miRNEST 2.0, an integrative microRNA resource :: BLAST
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 ctgggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacact 60
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgacccac 90
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 ctgggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacact 60
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgacccac 90
>33278_bta-mir-200a:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgt 60
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 61 ctggtaacgatgttcaaaggtgaccc 86
>32788_rno-mir-200a:mirbase
Length = 89
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 ctgggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacact 60
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgaccca 89
>33035_rno-mir-3548:mirbase
Length = 120
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Minus
Query: 1 ctgggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacact 60
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 102 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 43
Query: 61 gtctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||||
Sbjct: 42 gtctggtaacgatgttcaaaggtgaccca 14
>27798_mml-mir-200a:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgacccac 90
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgaccc 88
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 2 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 61
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 62 ctggtaacgatgttcaaaggtgaccc 87
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgaccc 88
>25991_gga-mir-200a:mirbase
Length = 87
Score = 91.7 bits (46), Expect = 8e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 9 ctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgtctggta 68
||||||||||||||| ||||||||||||||||| || || | |||||||||||||||||
Sbjct: 7 ctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctggta 66
Query: 69 acgatgttcaaagg 82
|||||||| |||||
Sbjct: 67 acgatgtttaaagg 80
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 ctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgtctggta 68
||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
Query: 69 acgatgttcaaagg 82
|||||||| |||||
Sbjct: 76 acgatgtttaaagg 89
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
||||| ||||||||||||||| ||||||||||||||| | || | |||||||||||||
Sbjct: 1 gggcctctgtgggcatcttactagacagtgctggattttt-ggatgtactctaacactgt 59
Query: 63 ctggtaacgatgttcaaag 81
|||||||||||||| ||||
Sbjct: 60 ctggtaacgatgtttaaag 78
>31528_oan-mir-200a:mirbase
Length = 114
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 11 gtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgtctggtaac 70
||||||||||||| ||||||||||||||| || || |||||||||||||||||||||
Sbjct: 25 gtgggcatcttactagacagtgctggatttg--ggatctactctaacactgtctggtaac 82
Query: 71 gatgttcaa 79
|||||||||
Sbjct: 83 gatgttcaa 91
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgttcaaag 81
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgtttaaag 80
>34355_dre-mir-200a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgtt 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctgga 37
||||||||||||||||||||||
Sbjct: 14 catcttaccggacagtgctgga 35
>34628_fru-mir-200a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 48 tctaacactgtctggtaacgatgtt 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 11 catcttacccgacagtgctggatt 34
>34775_tni-mir-200a:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaacgatgtt 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 1 catcttacctgacagtgctggatt 24
>34310_dre-mir-141:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatg 74
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
