miRNEST 2.0, an integrative microRNA resource :: BLAST
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 107 bits (54), Expect = 1e-24
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 tcgccatcttactgggcagcattggatg-tgtctggtctctaatactgcctggtaatgat 63
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 5 tcgccatcttactgggcagcattggatggtgtcaggtctctaatactgcctggtaatgat 64
Query: 64 gacggc 69
||||||
Sbjct: 65 gacggc 70
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 107 bits (54), Expect = 1e-24
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccgtcgccatcttactgggcagcattggat-gtgtctggtctctaatactgcctggtaa 59
||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1 gccgtggccatcttactgggcagcattggatagtgtctgatctctaatactgcctggtaa 60
Query: 60 tgatgacggc 69
||||||||||
Sbjct: 61 tgatgacggc 70
>32789_rno-mir-200b:mirbase
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccgtcgccatcttactgggcagcattggat-gtgtctggtctctaatactgcctggtaa 59
||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 13 gccgtggccatcttactgggcagcattggatagtgtctgatctctaatactgcctggtaa 72
Query: 60 tgatgacggc 69
||||||||||
Sbjct: 73 tgatgacggc 82
>33279_bta-mir-200b:mirbase
Length = 59
Score = 101 bits (51), Expect = 6e-23
Identities = 58/59 (98%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggatg-tgtctggtctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ccatcttactgggcagcattggatggtgtctggtctctaatactgcctggtaatgatga 59
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 99.6 bits (50), Expect = 2e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccgtcgccatcttactgggcagcattggatgt-gtctggtctctaatactgcctggtaa 59
||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 13 gccgtggccatcttactgggcagcattggatggagtcaggtctctaatactgcctggtaa 72
Query: 60 tgatgacggc 69
||||||||||
Sbjct: 73 tgatgacggc 82
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 79.8 bits (40), Expect = 2e-16
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggat-gtgtctg-gtctctaatactgcctggtaatgatga 65
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 1 ccatcttactgggcagcattggatggtgtctgtgtttctaatactgcctggtaatgatga 60
>31529_oan-mir-200b:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 5e-14
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggatgtg-tctg-gtctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||
Sbjct: 23 ccatcttactgggcagcattggatgagttctgtgtttctaatactgcctggtaatgatga 82
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 65.9 bits (33), Expect = 3e-12
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 7 gccatcttactgggcagcattggatgt-gtctg-gtctctaatactgcctggtaatgatg 64
||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||
Sbjct: 14 gccatcttactgggcagcattggattttgtctatgtttctaatactgcctggtaatgatg 73
Query: 65 a 65
|
Sbjct: 74 a 74
>25992_gga-mir-200b:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggatg-tgtctg-gtctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||
Sbjct: 8 ccatcttactgggcagcattggatgttctctgtttttctaatactgcctggtaatgatga 67
>34629_fru-mir-200b:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||||
Sbjct: 46 tctctaatactgcctggtaatgatga 71
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 ctctaatactgcctggtaatgatga 65
|||||||||||||||||||||||||
Sbjct: 38 ctctaatactgcctggtaatgatga 62
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 catcttactgggcagcattggatg 32
||||||||||||||||||||||||
Sbjct: 4 catcttactgggcagcattggatg 27
>34357_dre-mir-200c:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 tctctaatactgcctggtaatgatg 64
|||||||||||||||||||||||||
Sbjct: 47 tctctaatactgcctggtaatgatg 71
>34356_dre-mir-200b:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatgatga 65
||||||||||||||||||||||||
Sbjct: 48 tctaatactgcctggtaatgatga 71
>34776_tni-mir-200b:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatgatga 65
||||||||||||||||||||||||
Sbjct: 37 tctaatactgcctggtaatgatga 60
>25519_pma-mir-200b:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatgatg 64
|||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatg 67
>25332_csa-mir-200:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 44 taatactgcctggtaatgatga 65
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 36 gtctctaatactgccgggtaatgatg 61
>27089_eca-mir-200c:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 37 gtctctaatactgccgggtaatgatg 62
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgccgggtaatgatg 64
>27799_mml-mir-200c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgccgggtaatgatg 64
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 38 gtctctaatactgccgggtaatgatg 63
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgccgggtaatgatg 64
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgccgggtaatgatg 64
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 40 gtctctaatactgccgggtaatgatg 65
>32790_rno-mir-200c:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 40 gtctctaatactgccgggtaatgatg 65
>33069_rno-mir-3575:mirbase
Length = 115
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 57 gtctctaatactgccgggtaatgatg 32
>33280_bta-mir-200c:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 36 gtctctaatactgccgggtaatgatg 61
>34889_sko-mir-200:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tctctaatactgcctggtaatgatg 64
|||||||||||| ||||||||||||
Sbjct: 57 tctctaatactgtctggtaatgatg 81
>24692_bfl-mir-200a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aatactgcctggtaatgatg 64
||||||||||||||||||||
Sbjct: 61 aatactgcctggtaatgatg 80
>24848_cin-mir-200:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatg 61
||||||||||||||||||||
Sbjct: 48 tctaatactgcctggtaatg 67
>24868_cin-mir-3575:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 42 tctaatactgcctggtaatg 61
||||||||||||||||||||
Sbjct: 25 tctaatactgcctggtaatg 6
>24869_cin-mir-3575:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 42 tctaatactgcctggtaatg 61
||||||||||||||||||||
Sbjct: 25 tctaatactgcctggtaatg 6
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatg 61
||||||||||||||||||||
Sbjct: 65 tctaatactgcctggtaatg 84
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatgatgacgg 68
||||| |||| ||||||||||||||||
Sbjct: 56 tctaacactgtctggtaatgatgacgg 82
