miRNEST 2.0, an integrative microRNA resource :: BLAST
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 60
Query: 62 gga 64
|||
Sbjct: 61 gga 63
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 64
Query: 62 gga 64
|||
Sbjct: 65 gga 67
>32790_rno-mir-200c:mirbase
Length = 69
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 64
Query: 62 gga 64
|||
Sbjct: 65 gga 67
>33069_rno-mir-3575:mirbase
Length = 115
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 33
Query: 62 gga 64
|||
Sbjct: 32 gga 30
>33280_bta-mir-200c:mirbase
Length = 65
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 60
Query: 62 gga 64
|||
Sbjct: 61 gga 63
>27799_mml-mir-200c:mirbase
Length = 68
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
Query: 62 gga 64
|||
Sbjct: 64 gga 66
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 62
Query: 62 gga 64
|||
Sbjct: 63 gga 65
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
Query: 62 gga 64
|||
Sbjct: 64 gga 66
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
Query: 62 gga 64
|||
Sbjct: 64 gga 66
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 4 tcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgatgg 63
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 6 tcttacccagcagtgtttgggtgccgctcgggagtctctaatactgccgggtaatgatgg 65
Query: 64 a 64
|
Sbjct: 66 a 66
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 gtctctaatactgccgggtaatgatg 62
||||||||||||||| ||||||||||
Sbjct: 40 gtctctaatactgcctggtaatgatg 65
>27088_eca-mir-200b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 gtctctaatactgccgggtaatgatg 62
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgcctggtaatgatg 64
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 gtctctaatactgccgggtaatgatg 62
||||||||||||||| ||||||||||
Sbjct: 52 gtctctaatactgcctggtaatgatg 77
>33279_bta-mir-200b:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 gtctctaatactgccgggtaatgatg 62
||||||||||||||| ||||||||||
Sbjct: 33 gtctctaatactgcctggtaatgatg 58
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tctctaatactgccgggtaatgatg 62
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>32789_rno-mir-200b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tctctaatactgccgggtaatgatg 62
|||||||||||||| ||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatg 77
>34357_dre-mir-200c:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tctctaatactgccgggtaatgatg 62
|||||||||||||| ||||||||||
Sbjct: 47 tctctaatactgcctggtaatgatg 71
>34629_fru-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tctctaatactgccgggtaatgatg 62
|||||||||||||| ||||||||||
Sbjct: 46 tctctaatactgcctggtaatgatg 70
>25519_pma-mir-200b:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatgg 63
|||||||||||| |||||||||||
Sbjct: 45 tctaatactgcctggtaatgatgg 68
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 ctctaatactgccgggtaatgatg 62
||||||||||||| ||||||||||
Sbjct: 38 ctctaatactgcctggtaatgatg 61
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 51 tctaatactgcctggtaatgatg 73
>25992_gga-mir-200b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 44 tctaatactgcctggtaatgatg 66
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 37 tctaatactgcctggtaatgatg 59
>31529_oan-mir-200b:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 59 tctaatactgcctggtaatgatg 81
>34356_dre-mir-200b:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 48 tctaatactgcctggtaatgatg 70
>34776_tni-mir-200b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tctaatactgccgggtaatgatg 62
|||||||||||| ||||||||||
Sbjct: 37 tctaatactgcctggtaatgatg 59
