miRNEST 2.0, an integrative microRNA resource :: BLAST
>26793_cfa-mir-302d:mirbase
Length = 70
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacatgataaaaataagtgcttccatgttt 60
Query: 61 tagtgtgg 68
||||||||
Sbjct: 61 tagtgtgg 68
>28558_hsa-mir-302d:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
Query: 61 tagtgtgg 68
|||||||
Sbjct: 61 gagtgtgg 68
>30313_ptr-mir-302d:mirbase
Length = 67
Score = 109 bits (55), Expect = 2e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
Query: 61 tagtgtg 67
||||||
Sbjct: 61 gagtgtg 67
>30930_ppy-mir-302d:mirbase
Length = 68
Score = 103 bits (52), Expect = 1e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggatgcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
Query: 61 tagtgtgg 68
|||||||
Sbjct: 61 gagtgtgg 68
>27834_mml-mir-302d:mirbase
Length = 68
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtggtatgacaaaaataagtgcttccatgttt 60
Query: 61 tagtgtgg 68
|||||||
Sbjct: 61 gagtgtgg 68
>33313_bta-mir-302d:mirbase
Length = 70
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/67 (94%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgactt--gagaaaaataagtgcttccatgt 58
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacttcataaaaaaataagtgcttccatgt 60
Query: 59 tttagtg 65
|||||||
Sbjct: 61 tttagtg 67
>31985_mmu-mir-302d:mirbase
Length = 66
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 5 tactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttttagt 64
||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct: 5 tactttaacatggaggcacttgctgtgcatt--taaaaataagtgcttccatgtttgagt 62
Query: 65 gtgg 68
||||
Sbjct: 63 gtgg 66
>26018_gga-mir-302b:mirbase
Length = 72
Score = 63.9 bits (32), Expect = 1e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 5 tactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttttagt 64
|||||||||||||||| ||| |||||| || | |||| |||||||||||||||||||||
Sbjct: 7 tactttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgttttagt 66
>27441_mdo-mir-302d:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 3e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
||||| |||||||||||| | |||||||||| || | |||| |||||||||||||||||
Sbjct: 1 cctctgctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
>31547_oan-mir-302-2:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 3 tctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgtttta 62
|||||||||||||||||| ||| |||||| || | ||| |||||||||||||||||||
Sbjct: 3 tctactttaacatggaggtgctttctgtgatttaa--aaagtaagtgcttccatgtttta 60
Query: 63 gt 64
||
Sbjct: 61 gt 62
>26020_gga-mir-302d:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtg-acttgagaaaaataagtgcttccatgtt 59
|||| ||||||||||||||| |||||||| || ||| |||| ||||||||||||||||
Sbjct: 1 cctcaactttaacatggaggtacttgctggacacctga-aaaagtaagtgcttccatgtt 59
Query: 60 ttagt 64
|||||
Sbjct: 60 ttagt 64
>27116_eca-mir-302b:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaa-taagtgcttccatgttttagt 64
||||||||||||| | ||| |||||||||| ||| | |||||||||||||||||||||
Sbjct: 11 actttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgttttagt 70
>27439_mdo-mir-302b:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 3 tctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgtttt 61
|||||||||||||||||| |||| ||||| || | ||| ||||||||||||||||||
Sbjct: 6 tctactttaacatggaggtactttctgtg--tttaaaaaggtaagtgcttccatgtttt 62
>27832_mml-mir-302b:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaa-taagtgcttccatgttttagt 64
||||||||||||| | ||| ||||||||| | || || |||||||||||||||||||||
Sbjct: 11 actttaacatggaagtgctttctgtgactttaaaataagtaagtgcttccatgttttagt 70
>28556_hsa-mir-302b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttttagt 64
||||||||||||| | ||| ||||||||| | ||| |||||||||||||||||||||
Sbjct: 11 actttaacatggaagtgctttctgtgacttta--aaagtaagtgcttccatgttttagt 67
>30311_ptr-mir-302b:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttttagt 64
||||||||||||| | ||| ||||||||| | ||| |||||||||||||||||||||
Sbjct: 11 actttaacatggaagtgctttctgtgacttta--aaagtaagtgcttccatgttttagt 67
>30928_ppy-mir-302b:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaa-taagtgcttccatgttttagt 64
||||||||||||| | ||| ||||||||| | || || |||||||||||||||||||||
Sbjct: 11 actttaacatggaagtgctttctgtgactttaaaagaagtaagtgcttccatgttttagt 70
>33311_bta-mir-302b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 8e-07
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 actttaacatggaggcacttgctgtgacttgagaaaaa-taagtgcttccatgttttagt 64
|||||||||||| | |||| ||||||||| |||| | |||||||||||||||||||||
Sbjct: 10 actttaacatggtagtactttctgtgacttttgaaatagtaagtgcttccatgttttagt 69
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27115_eca-mir-302a:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
>33310_bta-mir-302a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
>31546_oan-mir-302-1:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taagtgcttccatgttttagtg 65
||||||||||||||||||||||
Sbjct: 78 taagtgcttccatgttttagtg 99
>26017_gga-mir-302a:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aagtgcttccatgttttagtg 65
|||||||||||||||||||||
Sbjct: 43 aagtgcttccatgttttagtg 63
>26791_cfa-mir-302b:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 taagtgcttccatgttttagt 64
|||||||||||||||||||||
Sbjct: 49 taagtgcttccatgttttagt 69
>31983_mmu-mir-302b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 taagtgcttccatgttttagt 64
|||||||||||||||||||||
Sbjct: 48 taagtgcttccatgttttagt 68
>26019_gga-mir-302c:mirbase
Length = 65
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 35 aaaagtaagtgcttccatgtttcagtg 61
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>27117_eca-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 32 aaaagtaagtgcttccatgtttcagtg 58
>27833_mml-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>30312_ptr-mir-302c:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
>33312_bta-mir-302c:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgttttagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 38 aaaagtaagtgcttccatgtttcagtg 64
