miRNEST 2.0, an integrative microRNA resource :: BLAST
>27132_eca-mir-338:mirbase
Length = 59
Score = 117 bits (59), Expect = 8e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>33326_bta-mir-338:mirbase
Length = 92
Score = 117 bits (59), Expect = 8e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
>34061_ssc-mir-338:mirbase
Length = 79
Score = 117 bits (59), Expect = 8e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 69
>26805_cfa-mir-338:mirbase
Length = 59
Score = 107 bits (54), Expect = 8e-25
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 2 aacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttg 58
>30955_ppy-mir-338:mirbase
Length = 67
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttgttg 63
>30956_ppy-mir-338:mirbase
Length = 67
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttgttg 63
>28587_hsa-mir-338:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
>28588_hsa-mir-338:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 69 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 11
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 69 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 11
>30334_ptr-mir-338:mirbase
Length = 66
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
>27850_mml-mir-338:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 3e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
>27851_mml-mir-338:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 3e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
>32004_mmu-mir-338:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 25 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 82
>32005_mmu-mir-338:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 25 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 82
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 72 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 15
>32856_rno-mir-338:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 5 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 62
>33022_rno-mir-3065:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 79 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 22
>33023_rno-mir-3065:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 79 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 22
>27442_mdo-mir-338:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgat-gacacacgca-actccagcatcagtgattttgtt 58
||||||||||||| |||||||||| | |||| | | |||||||||||||||||||||||
Sbjct: 13 caacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattttgtt 72
Query: 59 g 59
|
Sbjct: 73 g 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 68 aactccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 68 aactccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 2e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 2e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 2e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 2e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62