miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41080_tcc-MIR156a:mirbase
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 12 ggggaagatcatgaccatgttgacagaagagagagagcacaacccggcatcagctaaaga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggaagatcatgaccatgttgacagaagagagagagcacaacccggcatcagctaaaga 60
Query: 72 aagtctttgcttttgttgggagtgtgctttctcttcttctgtcaccatcatcttttcacc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagtctttgcttttgttgggagtgtgctttctcttcttctgtcaccatcatcttttcacc 120
Query: 132 ccct 135
||||
Sbjct: 121 ccct 124
>41561_vvi-MIR156a:mirbase
Length = 104
Score = 117 bits (59), Expect = 2e-27
Identities = 86/94 (91%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgt 87
||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||| |
Sbjct: 7 atgttgacagaagagagggagcacaacccagcatcagctaaag--actctttgcttttct 64
Query: 88 tgggagtgtgctttctcttcttctgtcaccatca 121
|||||||||||| ||||||||||||||| |||||
Sbjct: 65 tgggagtgtgctctctcttcttctgtcatcatca 98
>41204_aqc-MIR529:mirbase
Length = 125
Score = 115 bits (58), Expect = 9e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgt 87
||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct: 14 atgttgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgt 73
Query: 88 tgggagtgtgctttctcttcttctgtcaccatca 121
|||||||||||| | | |||||||||| |||||
Sbjct: 74 tgggagtgtgctctttgctcttctgtcatcatca 107
>40334_rco-MIR156e:mirbase
Length = 95
Score = 111 bits (56), Expect = 1e-25
Identities = 87/95 (91%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccggcatca-gctaaagaaagtctttgcttttg 86
|||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||
Sbjct: 2 atgttgacagaagagagagagcacaacccggcattaggctaaag--agtctttgcctttg 59
Query: 87 ttgggagtgtgctttctcttcttctgtcaccatca 121
||||||||||||| |||| |||||||||| |||||
Sbjct: 60 ttgggagtgtgctctctcctcttctgtcatcatca 94
>41298_ptc-MIR156k:mirbase
Length = 101
Score = 103 bits (52), Expect = 4e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 27 catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
|||| ||||||||||||| ||||||||||| | | ||||||||| ||||||||||||||
Sbjct: 6 catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65
Query: 87 ttgggagtgtgctttctcttcttctgtcacca 118
|||| | |||||||||||||||||||||||||
Sbjct: 66 ttgg-actgtgctttctcttcttctgtcacca 96
>40430_gma-MIR156f:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 3e-20
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 27 catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
|||||||||||||||||||||||||||||||| | | ||||| | |||||||| ||||
Sbjct: 7 catgttgacagaagagagagagcacaacccgggaatggttaaagga-gtctttgcctttg 65
Query: 87 ttgggagtgtgctttctcttcttctgtcaccatca 121
||||||||||||| ||||||| ||||||| |||||
Sbjct: 66 ttgggagtgtgctctctcttcctctgtcatcatca 100
>40426_gma-MIR156b:mirbase
Length = 120
Score = 93.7 bits (47), Expect = 3e-20
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 27 catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
|||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||
Sbjct: 16 catgttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttg 74
Query: 87 ttgggagtgtgctttctcttcttctgtcaccatca 121
|||||||||||| ||||||| ||||||| |||||
Sbjct: 75 ttgggagtgtgccctctcttcctctgtcatcatca 109
>41914_osa-MIR156k:mirbase
Length = 106
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
||||||||||||||||||||||||||||| ||||
Sbjct: 11 tgacagaagagagagagcacaacccggcagcagc 44
>40396_ahy-MIR156c:mirbase
Length = 139
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccg 57
||||||||||||||||||||||||||||||
Sbjct: 18 atgttgacagaagagagagagcacaacccg 47
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 83 tttgttgggagtgtgctttctcttcttctgtcaccatc 120
||||||||||||||||| ||| |||||||||| ||||
Sbjct: 73 tttgttgggagtgtgctctctactcttctgtcatcatc 110
>40393_ahy-MIR156a:mirbase
Length = 116
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccg 57
||||||||||||||||||||||||||||||
Sbjct: 14 atgttgacagaagagagagagcacaacccg 43
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 83 tttgttgggagtgtgctttctcttcttctgtcaccatc 120
||||||||||||||||| ||| |||||||||| ||||
Sbjct: 69 tttgttgggagtgtgctctctactcttctgtcatcatc 106
>39797_aly-MIR156h:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 2e-09
Identities = 82/97 (84%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccggcatcagc-taaagaaagtctttgcttttg 86
|||||||||||||| ||||||||||||| || || ||| ||||| ||| ||||| |||
Sbjct: 4 atgttgacagaagaaagagagcacaacctgggattagcaaaaagatagt-tttgcccttg 62
Query: 87 ttgggagtgtgctttctcttcttctgtcaccatcatc 123
| ||||||||||| ||| | |||||| ||||||||||
Sbjct: 63 tcgggagtgtgctctctttccttctgccaccatcatc 99
>40009_ath-MIR156h:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 7e-09
Identities = 81/96 (84%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 28 atgttgacagaagagagagagcacaacccggcatcagc-taaagaaagtctttgcttttg 86
|||||||||||||| ||||||||||||| || || ||| ||||| ||| ||||| |||
Sbjct: 8 atgttgacagaagaaagagagcacaacctgggattagcaaaaagatagt-tttgcccttg 66
Query: 87 ttgggagtgtgctttctcttcttctgtcaccatcat 122
| ||||||||||| ||| | |||||| |||||||||
Sbjct: 67 tcgggagtgtgctctctttccttctgccaccatcat 102
>42687_zma-MIR156j:mirbase
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
||||||||||||||||||||||||| ||| ||||
Sbjct: 21 tgacagaagagagagagcacaacccagcaccagc 54
>42488_sbi-MIR156d:mirbase
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
||||||||||||||||||||||||| ||| ||||
Sbjct: 21 tgacagaagagagagagcacaacccagcaccagc 54
>41867_far-MIR156b:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgacagaagagagagagcaca 52
|||||||||||||||||||||||
Sbjct: 52 gttgacagaagagagagagcaca 74
>41866_far-MIR156a:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgacagaagagagagagcaca 52
|||||||||||||||||||||||
Sbjct: 52 gttgacagaagagagagagcaca 74
>41726_bdi-MIR156:mirbase
Length = 147
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgacagaagagagagagcaca 52
|||||||||||||||||||||||
Sbjct: 99 gttgacagaagagagagagcaca 121
>40427_gma-MIR156c:mirbase
Length = 185
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaacc 55
||||||||||||| |||||||||||||
Sbjct: 144 tgttgacagaagatagagagcacaacc 170
>41877_far-MIR529:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagagagcaca 52
||||||||||||||||||||||
Sbjct: 47 ttgacagaagagagagagcaca 68
>41566_vvi-MIR156f:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaac 54
||||||||||||| ||||||||||||
Sbjct: 9 tgttgacagaagatagagagcacaac 34
>41085_tcc-MIR156f:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaac 54
||||||||||||| ||||||||||||
Sbjct: 19 tgttgacagaagatagagagcacaac 44
>40335_rco-MIR156f:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaac 54
||||||||||||| ||||||||||||
Sbjct: 4 tgttgacagaagatagagagcacaac 29
>40648_mtr-MIR156:mirbase
Length = 460
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagagagcaca 52
|||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41
>40395_ahy-MIR156b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaa 53
||||||||||||| |||||||||||
Sbjct: 21 tgttgacagaagatagagagcacaa 45
>40394_ahy-MIR156b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcacaa 53
||||||||||||| |||||||||||
Sbjct: 21 tgttgacagaagatagagagcacaa 45
>41913_osa-MIR156j:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
|||||||||||||||| |||||||
Sbjct: 39 tgttgacagaagagagtgagcaca 62
>41911_osa-MIR156h:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
|||||||||||||||| |||||||
Sbjct: 6 tgttgacagaagagagtgagcaca 29
>41569_vvi-MIR156i:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>41567_vvi-MIR156g:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>41297_ptc-MIR156j:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>41296_ptc-MIR156i:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>41294_ptc-MIR156g:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>41084_tcc-MIR156e:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagatagagagcaca 42
>41077_gra-MIR157b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 3 tgttgacagaagatagagagcaca 26
>41076_gra-MIR157a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 3 tgttgacagaagatagagagcaca 26
>40655_mtr-MIR156h:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>40653_mtr-MIR156f:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>40652_mtr-MIR156e:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>40431_gma-MIR156g:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 22 tgttgacagaagatagagagcaca 45
>40428_gma-MIR156d:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagatagagagcaca 42
>40337_rco-MIR156h:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>40011_ath-MIR157b:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 17 tgttgacagaagatagagagcaca 40
>40010_ath-MIR157a:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 2 tgttgacagaagatagagagcaca 25
>39799_aly-MIR157b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 2 tgttgacagaagatagagagcaca 25
>39798_aly-MIR157a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 tgttgacagaagagagagagcaca 52
||||||||||||| ||||||||||
Sbjct: 14 tgttgacagaagatagagagcaca 37
>39416_pta-MIR156b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 32 tgacagaagagagagagcacaacc 55
|||||||||| |||||||||||||
Sbjct: 3 tgacagaagatagagagcacaacc 26
