miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41080_tcc-MIR156a:mirbase
          Length = 124

 Score =  246 bits (124), Expect = 4e-66
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggggaagatcatgaccatgttgacagaagagagagagcacaacccggcatcagctaaaga 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggggaagatcatgaccatgttgacagaagagagagagcacaacccggcatcagctaaaga 60

                                                                       
Query: 72  aagtctttgcttttgttgggagtgtgctttctcttcttctgtcaccatcatcttttcacc 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagtctttgcttttgttgggagtgtgctttctcttcttctgtcaccatcatcttttcacc 120

               
Query: 132 ccct 135
           ||||
Sbjct: 121 ccct 124




>41561_vvi-MIR156a:mirbase
          Length = 104

 Score =  117 bits (59), Expect = 2e-27
 Identities = 86/94 (91%), Gaps = 2/94 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgt 87
           ||||||||||||||||| ||||||||||| |||||||||||||  | ||||||||||| |
Sbjct: 7   atgttgacagaagagagggagcacaacccagcatcagctaaag--actctttgcttttct 64

                                             
Query: 88  tgggagtgtgctttctcttcttctgtcaccatca 121
           |||||||||||| ||||||||||||||| |||||
Sbjct: 65  tgggagtgtgctctctcttcttctgtcatcatca 98




>41204_aqc-MIR529:mirbase
          Length = 125

 Score =  115 bits (58), Expect = 9e-27
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgt 87
           |||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||||
Sbjct: 14  atgttgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgt 73

                                             
Query: 88  tgggagtgtgctttctcttcttctgtcaccatca 121
           |||||||||||| | |  |||||||||| |||||
Sbjct: 74  tgggagtgtgctctttgctcttctgtcatcatca 107




>40334_rco-MIR156e:mirbase
          Length = 95

 Score =  111 bits (56), Expect = 1e-25
 Identities = 87/95 (91%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgttgacagaagagagagagcacaacccggcatca-gctaaagaaagtctttgcttttg 86
           |||||||||||||||||||||||||||||||||| | |||||||  ||||||||| ||||
Sbjct: 2   atgttgacagaagagagagagcacaacccggcattaggctaaag--agtctttgcctttg 59

                                              
Query: 87  ttgggagtgtgctttctcttcttctgtcaccatca 121
           ||||||||||||| |||| |||||||||| |||||
Sbjct: 60  ttgggagtgtgctctctcctcttctgtcatcatca 94




>41298_ptc-MIR156k:mirbase
          Length = 101

 Score =  103 bits (52), Expect = 4e-23
 Identities = 83/92 (90%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 27  catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
           |||| ||||||||||||| ||||||||||| | |  ||||||||| ||||||||||||||
Sbjct: 6   catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65

                                           
Query: 87  ttgggagtgtgctttctcttcttctgtcacca 118
           |||| | |||||||||||||||||||||||||
Sbjct: 66  ttgg-actgtgctttctcttcttctgtcacca 96




>40430_gma-MIR156f:mirbase
          Length = 106

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 84/95 (88%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 27  catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
           |||||||||||||||||||||||||||||||| |   | ||||| | |||||||| ||||
Sbjct: 7   catgttgacagaagagagagagcacaacccgggaatggttaaagga-gtctttgcctttg 65

                                              
Query: 87  ttgggagtgtgctttctcttcttctgtcaccatca 121
           ||||||||||||| ||||||| ||||||| |||||
Sbjct: 66  ttgggagtgtgctctctcttcctctgtcatcatca 100




>40426_gma-MIR156b:mirbase
          Length = 120

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 84/95 (88%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 27  catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 86
           |||||||||||||||||||||||||||||||| |   |||||||  ||||||||| ||||
Sbjct: 16  catgttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttg 74

                                              
Query: 87  ttgggagtgtgctttctcttcttctgtcaccatca 121
           ||||||||||||  ||||||| ||||||| |||||
Sbjct: 75  ttgggagtgtgccctctcttcctctgtcatcatca 109




>41914_osa-MIR156k:mirbase
          Length = 106

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
          ||||||||||||||||||||||||||||| ||||
Sbjct: 11 tgacagaagagagagagcacaacccggcagcagc 44




>40396_ahy-MIR156c:mirbase
          Length = 139

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 28 atgttgacagaagagagagagcacaacccg 57
          ||||||||||||||||||||||||||||||
Sbjct: 18 atgttgacagaagagagagagcacaacccg 47



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 83  tttgttgggagtgtgctttctcttcttctgtcaccatc 120
           ||||||||||||||||| |||  |||||||||| ||||
Sbjct: 73  tttgttgggagtgtgctctctactcttctgtcatcatc 110




>40393_ahy-MIR156a:mirbase
          Length = 116

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 28 atgttgacagaagagagagagcacaacccg 57
          ||||||||||||||||||||||||||||||
Sbjct: 14 atgttgacagaagagagagagcacaacccg 43



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 83  tttgttgggagtgtgctttctcttcttctgtcaccatc 120
           ||||||||||||||||| |||  |||||||||| ||||
Sbjct: 69  tttgttgggagtgtgctctctactcttctgtcatcatc 106




>39797_aly-MIR156h:mirbase
          Length = 99

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 82/97 (84%), Gaps = 2/97 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgttgacagaagagagagagcacaacccggcatcagc-taaagaaagtctttgcttttg 86
           |||||||||||||| ||||||||||||| || || |||  ||||| ||| |||||  |||
Sbjct: 4   atgttgacagaagaaagagagcacaacctgggattagcaaaaagatagt-tttgcccttg 62

                                                
Query: 87  ttgggagtgtgctttctcttcttctgtcaccatcatc 123
           | ||||||||||| ||| | |||||| ||||||||||
Sbjct: 63  tcgggagtgtgctctctttccttctgccaccatcatc 99




>40009_ath-MIR156h:mirbase
          Length = 106

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 81/96 (84%), Gaps = 2/96 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgttgacagaagagagagagcacaacccggcatcagc-taaagaaagtctttgcttttg 86
           |||||||||||||| ||||||||||||| || || |||  ||||| ||| |||||  |||
Sbjct: 8   atgttgacagaagaaagagagcacaacctgggattagcaaaaagatagt-tttgcccttg 66

                                               
Query: 87  ttgggagtgtgctttctcttcttctgtcaccatcat 122
           | ||||||||||| ||| | |||||| |||||||||
Sbjct: 67  tcgggagtgtgctctctttccttctgccaccatcat 102




>42687_zma-MIR156j:mirbase
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
          ||||||||||||||||||||||||| ||| ||||
Sbjct: 21 tgacagaagagagagagcacaacccagcaccagc 54




>42488_sbi-MIR156d:mirbase
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 32 tgacagaagagagagagcacaacccggcatcagc 65
          ||||||||||||||||||||||||| ||| ||||
Sbjct: 21 tgacagaagagagagagcacaacccagcaccagc 54




>41867_far-MIR156b:mirbase
          Length = 180

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 gttgacagaagagagagagcaca 52
          |||||||||||||||||||||||
Sbjct: 52 gttgacagaagagagagagcaca 74




>41866_far-MIR156a:mirbase
          Length = 180

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 gttgacagaagagagagagcaca 52
          |||||||||||||||||||||||
Sbjct: 52 gttgacagaagagagagagcaca 74




>41726_bdi-MIR156:mirbase
          Length = 147

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 30  gttgacagaagagagagagcaca 52
           |||||||||||||||||||||||
Sbjct: 99  gttgacagaagagagagagcaca 121




>40427_gma-MIR156c:mirbase
          Length = 185

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 29  tgttgacagaagagagagagcacaacc 55
           ||||||||||||| |||||||||||||
Sbjct: 144 tgttgacagaagatagagagcacaacc 170




>41877_far-MIR529:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 31 ttgacagaagagagagagcaca 52
          ||||||||||||||||||||||
Sbjct: 47 ttgacagaagagagagagcaca 68




>41566_vvi-MIR156f:mirbase
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 29 tgttgacagaagagagagagcacaac 54
          ||||||||||||| ||||||||||||
Sbjct: 9  tgttgacagaagatagagagcacaac 34




>41085_tcc-MIR156f:mirbase
          Length = 124

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 29 tgttgacagaagagagagagcacaac 54
          ||||||||||||| ||||||||||||
Sbjct: 19 tgttgacagaagatagagagcacaac 44




>40335_rco-MIR156f:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 29 tgttgacagaagagagagagcacaac 54
          ||||||||||||| ||||||||||||
Sbjct: 4  tgttgacagaagatagagagcacaac 29




>40648_mtr-MIR156:mirbase
          Length = 460

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 tgacagaagagagagagcaca 52
          |||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41




>40395_ahy-MIR156b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 29 tgttgacagaagagagagagcacaa 53
          ||||||||||||| |||||||||||
Sbjct: 21 tgttgacagaagatagagagcacaa 45




>40394_ahy-MIR156b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 29 tgttgacagaagagagagagcacaa 53
          ||||||||||||| |||||||||||
Sbjct: 21 tgttgacagaagatagagagcacaa 45




>41913_osa-MIR156j:mirbase
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          |||||||||||||||| |||||||
Sbjct: 39 tgttgacagaagagagtgagcaca 62




>41911_osa-MIR156h:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          |||||||||||||||| |||||||
Sbjct: 6  tgttgacagaagagagtgagcaca 29




>41569_vvi-MIR156i:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 9  tgttgacagaagatagagagcaca 32




>41567_vvi-MIR156g:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 9  tgttgacagaagatagagagcaca 32




>41297_ptc-MIR156j:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 9  tgttgacagaagatagagagcaca 32




>41296_ptc-MIR156i:mirbase
          Length = 99

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 9  tgttgacagaagatagagagcaca 32




>41294_ptc-MIR156g:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 9  tgttgacagaagatagagagcaca 32




>41084_tcc-MIR156e:mirbase
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagatagagagcaca 42




>41077_gra-MIR157b:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 3  tgttgacagaagatagagagcaca 26




>41076_gra-MIR157a:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 3  tgttgacagaagatagagagcaca 26




>40655_mtr-MIR156h:mirbase
          Length = 94

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 4  tgttgacagaagatagagagcaca 27




>40653_mtr-MIR156f:mirbase
          Length = 94

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 4  tgttgacagaagatagagagcaca 27




>40652_mtr-MIR156e:mirbase
          Length = 172

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 4  tgttgacagaagatagagagcaca 27




>40431_gma-MIR156g:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 22 tgttgacagaagatagagagcaca 45




>40428_gma-MIR156d:mirbase
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagatagagagcaca 42




>40337_rco-MIR156h:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 4  tgttgacagaagatagagagcaca 27




>40011_ath-MIR157b:mirbase
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 17 tgttgacagaagatagagagcaca 40




>40010_ath-MIR157a:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 2  tgttgacagaagatagagagcaca 25




>39799_aly-MIR157b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 2  tgttgacagaagatagagagcaca 25




>39798_aly-MIR157a:mirbase
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 tgttgacagaagagagagagcaca 52
          ||||||||||||| ||||||||||
Sbjct: 14 tgttgacagaagatagagagcaca 37




>39416_pta-MIR156b:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 32 tgacagaagagagagagcacaacc 55
          |||||||||| |||||||||||||
Sbjct: 3  tgacagaagatagagagcacaacc 26