miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28345_hsa-let-7e:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>30737_ppy-let-7e:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>33114_bta-let-7e:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>30132_ptr-let-7e:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
Query: 62 ctcctagctttccccagg 79
||||||||||||||||||
Sbjct: 61 ctcctagctttccccagg 78
>26933_eca-let-7e:mirbase
Length = 79
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>33901_ssc-let-7e:mirbase
Length = 80
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 62
Query: 61 cctcctagctttccccag 78
||||||||||||||||||
Sbjct: 63 cctcctagctttccccag 80
>31758_mmu-let-7e:mirbase
Length = 93
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 68 cctcctagctttccccagg 86
>32644_rno-let-7e:mirbase
Length = 93
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 68 cctcctagctttccccagg 86
>33100_rno-mir-3596c:mirbase
Length = 117
Score = 141 bits (71), Expect = 8e-35
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 101 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 42
Query: 61 cctcctagctttccccagg 79
|||||||||||||||||||
Sbjct: 41 cctcctagctttccccagg 23
>26609_cfa-let-7e:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
Query: 68 gctttcc 74
|||||||
Sbjct: 61 gctttcc 67
>25676_xtr-let-7a:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 5 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 64
||||||||||| |||||||||||||||||| ||||| |||||||| ||| ||| |||||
Sbjct: 11 ggctgaggtagtaggttgtatagttgaggataacaccaaaggagataactgtacagcctc 70
Query: 65 ctagctttccc 75
||| |||||||
Sbjct: 71 ctatctttccc 81
>34525_fru-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagatgactgtacagcctccta 65
Query: 68 gctttccc 75
||||||||
Sbjct: 66 gctttccc 73
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagataactgtacagcctccta 65
Query: 68 gctttccc 75
||||||||
Sbjct: 66 gctttccc 73
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 5 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 64
||||||||||| ||||||||||||| || | ||| | | |||||| ||| ||| |||||
Sbjct: 2 ggctgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 61
Query: 65 ctagctttcc 74
||||||||||
Sbjct: 62 ctagctttcc 71
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||||| | |||||| ||| ||| |||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||||| | |||||| ||| ||| |||||||
Sbjct: 11 tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 70
Query: 68 gctttcc 74
|||||||
Sbjct: 71 gctttcc 77
>26606_cfa-let-7a-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 17 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 76
Query: 68 gctttcc 74
|||||||
Sbjct: 77 gctttcc 83
>26929_eca-let-7a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>27319_mdo-let-7a-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>28340_hsa-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>30127_ptr-let-7a-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>30732_ppy-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>33109_bta-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 67
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 68 gctttcc 74
|||||||
Sbjct: 65 gctttcc 71
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 3 cgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcc 62
|||| |||||||| ||||||||||||| || | ||||| | |||||| ||| ||| ||
Sbjct: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
Query: 63 tcctagctttcccc 76
| ||||||||||||
Sbjct: 66 ttctagctttcccc 79
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 5 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 64
||||||||||| ||||||||||||| || ||| | | |||||| ||| ||| |||||
Sbjct: 14 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 73
Query: 65 ctagctttcc 74
||||||||||
Sbjct: 74 ctagctttcc 83
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 1e-05
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 5 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 64
||||||||||| ||||||||||||| || ||| | | |||||| ||| ||| |||||
Sbjct: 91 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 32
Query: 65 ctagctttcc 74
||||||||||
Sbjct: 31 ctagctttcc 22
>38846_lgi-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgag 32
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>24642_bfl-let-7a-2:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgag 32
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 ggctgaggtaggaggttgtatagtt 29
||||||||||| |||||||||||||
Sbjct: 8 ggctgaggtagtaggttgtatagtt 32
>34862_sko-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgag 32
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>34958_isc-let-7:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tgaggtaggaggttgtatagttgag 32
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>38593_ppc-let-7:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 gctgaggtaggaggttgtatagtt 29
|||||||||| |||||||||||||
Sbjct: 15 gctgaggtagtaggttgtatagtt 38
>34168_dre-let-7a-4:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 3 cgggctgaggtaggaggttgtatagtt 29
|||| |||||||| |||||||||||||
Sbjct: 10 cgggatgaggtagtaggttgtatagtt 36
