miRNEST 2.0, an integrative microRNA resource :: BLAST
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 63
Query: 61 tttactctctct 72
||||||||||||
Sbjct: 64 tttactctctct 75
>27556_lla-mir-30c:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 61 tttactct 68
||||||||
Sbjct: 61 tttactct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 61 tttactct 68
||||||||
Sbjct: 61 tttactct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 61 tttactct 68
||||||||
Sbjct: 61 tttactct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 61 tttactct 68
||||||||
Sbjct: 61 tttactct 68
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
Query: 61 tttactctctct 72
||||||||||||
Sbjct: 68 tttactctctct 79
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 agatattgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
Query: 61 tttactctctct 72
||||||||||||
Sbjct: 68 tttactctctct 79
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
Query: 64 actctc 69
||||||
Sbjct: 64 actctc 69
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 67 ctctct 72
||||||
Sbjct: 61 ctctct 66
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 67 ctctct 72
||||||
Sbjct: 61 ctctct 66
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 67 ct 68
||
Sbjct: 61 ct 62
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>33170_bta-mir-30f:mirbase
Length = 84
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
Query: 61 tttactctctct 72
||||||||||||
Sbjct: 68 tttactctctct 79
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 8 agatactgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaaggctg 65
Query: 61 tttactctctct 72
||||||||||||
Sbjct: 66 tttactctctct 77
>31452_oan-mir-30c:mirbase
Length = 122
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 28 tactgtaaacatcctacactctcagctgtagat-gtgagaaagctgggagaaggctgttt 86
Query: 64 actctctct 72
|||||||||
Sbjct: 87 actctctct 95
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 8e-10
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||| | | |||| |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 67 c 67
|
Sbjct: 76 c 76
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtg 42
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>33167_bta-mir-30c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtg 52
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>34249_dre-mir-30c:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctg 31
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||| ||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtg 38
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctg 31
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctc 26
||||||||||||||||||||
Sbjct: 9 tgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctc 26
||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29
>25917_gga-mir-30b:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
>34248_dre-mir-30b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
