miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27694_mml-mir-34c:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 2 gtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacg 61
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
Query: 62 gccaggtaaaaagatt 77
||||||||||||||||
Sbjct: 61 gccaggtaaaaagatt 76
>26987_eca-mir-34c:mirbase
Length = 77
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>33177_bta-mir-34c:mirbase
Length = 77
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaagatt 77
|||||||||||||||||
Sbjct: 61 ggccaggtaaaaagatt 77
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 agccaggtaaaaaga 75
>32699_rno-mir-34c:mirbase
Length = 77
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 ggccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 agccaggtaaaaaga 75
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 101 bits (51), Expect = 7e-23
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccagg 67
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
>31462_oan-mir-34:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9 agtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacac 68
Query: 61 ggccaggtaaaaaga 75
||||||||||||||
Sbjct: 69 agccaggtaaaaaga 83
>25927_gga-mir-34c:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccag 66
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ccaggcagtgtagttagctgattgc 35
|||||||||||||||||||||||||
Sbjct: 39 ccaggcagtgtagttagctgattgc 63
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattg 25
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattg 25
>25926_gga-mir-34b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 10 caggcagtgtagttagctgattg 32
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 10 caggcagtgtagttagctgattg 32
