miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 ctgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 63
Query: 61 cccttaccccaaaaagcattcgcggagggcgc 92
||||||||||||||||||||||||||||||||
Sbjct: 64 cccttaccccaaaaagcattcgcggagggcgc 95
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 ctgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 60
Query: 61 cccttaccccaaaaagcattcgcggagggcgc 92
||||||||||||||||||||||||||||||||
Sbjct: 61 cccttaccccaaaaagcattcgcggagggcgc 92
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 ctgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaag 60
Query: 61 cccttaccccaaaaagcattcgcggagggcgc 92
||||||||||||||||||||||||||||||||
Sbjct: 61 cccttaccccaaaaagcattcgcggagggcgc 92
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 62 ccttaccccaaaaagcattcgcggagggcg 91
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 62 ccttaccccaaaaagcattcgcggagggcg 91
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 62 ccttaccccaaaaagcattcgcggagggcg 91
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 62 ccttaccccaaaaagcattcgcggagggcg 91
||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 62 ccttaccccaaaaagcattcgcggagggcg 91
||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 3 gcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcc 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcc 60
Query: 63 cttaccccaaaaagcattcgcggagggcg 91
|||||||||||||||||| ||||||||||
Sbjct: 61 cttaccccaaaaagcatttgcggagggcg 89
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 6 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
Query: 66 accccaaaaagcattcgcgg 85
||||||||||||||||||||
Sbjct: 61 accccaaaaagcattcgcgg 80
>27020_eca-mir-129b:mirbase
Length = 74
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 62
Query: 72 aaaagcattcgc 83
||||||||||||
Sbjct: 63 aaaagcattcgc 74
>27021_eca-mir-129b:mirbase
Length = 74
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 62
Query: 72 aaaagcattcgc 83
||||||||||||
Sbjct: 63 aaaagcattcgc 74
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 16 ctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaa 75
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagccggaagcccttaccccaaaaa 60
Query: 76 gca 78
|||
Sbjct: 61 gca 63
>26458_tgu-mir-129:mirbase
Length = 83
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 6 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 64
||||| |||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
Query: 65 taccccaaaaagcattcgcggag 87
|||||||||||||||||||||||
Sbjct: 61 taccccaaaaagcattcgcggag 83
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 13 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 71
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
Query: 72 aaaagcattcgcggagggcg 91
||||||||| ||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>25478_pma-mir-129a:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacccc 70
||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||
Sbjct: 11 gaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacccc 67
Query: 71 aaaaagcattcg 82
||||||||||||
Sbjct: 68 aaaaagcattcg 79
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 8e-14
Identities = 71/81 (87%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttaccc 69
|||||||||||||||||||||||||||| | |||| |||| | |||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttaccc 66
Query: 70 caaaaagcattcgcggagggc 90
||||||||||| |||||||||
Sbjct: 67 caaaaagcatttgcggagggc 87
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 73
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 74 aag 76
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 73
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 74 aag 76
|||
Sbjct: 64 aag 66
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 5e-12
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 71
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgttctctgctcac---ccggaagcccttacccca 66
Query: 72 aaaagcattcgcggagggc 90
||||||||| |||| ||||
Sbjct: 67 aaaagcatttgcggggggc 85
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacccc 70
|||||||||||||||||||||||||||| | | ||| | | || |||||||||||||
Sbjct: 10 gaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagcccttacccc 69
Query: 71 aaaaagcattcgcggagg 88
|||||||||| |||||||
Sbjct: 70 aaaaagcatttgcggagg 87
>27379_mdo-mir-129:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 63
Query: 72 aaaag 76
|||||
Sbjct: 64 aaaag 68
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 atctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 15 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
Query: 72 aaaag 76
|||||
Sbjct: 72 aaaag 76
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tctttttgcggtctgggcttgctgt 39
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgt 32
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctttttgcggtctgggcttgctgt 39
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
