miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27743_mml-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>28458_hsa-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>28459_hsa-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>30231_ptr-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>30842_ppy-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>30843_ppy-mir-140:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>28214_mne-mir-140:mirbase
Length = 100
Score = 190 bits (96), Expect = 1e-49
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tgtgtctctctctgtgtcctgccagtggttctaccctatggtaggttacgtcatgctgtt 60
Query: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaccacagggtagaaccacggacaggataccggggcacc 100
>31498_oan-mir-140:mirbase
Length = 123
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgtt 72
Query: 61 ctaccacagggtagaaccacggacaggataccggg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 73 ctaccacagggtagaaccacggacaggataccggg 107
>33226_bta-mir-140:mirbase
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 7 tctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 60
Query: 67 cagggtagaaccacggacaggataccggggcacc 100
||||||||||||||||||||||||||||||||||
Sbjct: 61 cagggtagaaccacggacaggataccggggcacc 94
>32745_rno-mir-140:mirbase
Length = 99
Score = 172 bits (87), Expect = 3e-44
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 2 gtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttc 61
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgtctctctctgtgtcctgccagtggttttaccctatggtaggttacatcatgctgttc 60
Query: 62 taccacagggtagaaccacggacaggataccggggcacc 100
|||||||||||||||||||||||||||||| || |||||
Sbjct: 61 taccacagggtagaaccacggacaggatactggagcacc 99
>25961_gga-mir-140:mirbase
Length = 95
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 7 tctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tctctccgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 64
Query: 67 cagggtagaaccacggacaggataccggggc 97
|||||||||||||||||| |||| |||||||
Sbjct: 65 cagggtagaaccacggacgggatgccggggc 95
>25787_xtr-mir-140:mirbase
Length = 94
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 8 ctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccac 67
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3 ctctctgtgtcctcccagtggttttaccctatggtaggttacgtcaggctgttctaccac 62
Query: 68 agggtagaaccacggacaggatac 91
||||||||||||||||||||||||
Sbjct: 63 agggtagaaccacggacaggatac 86
>26472_tgu-mir-140:mirbase
Length = 72
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
Query: 74 gaaccacggac 84
|||||||||||
Sbjct: 62 gaaccacggac 72
>27388_mdo-mir-140:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 18 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 78 cacggacagg 87
||||||||||
Sbjct: 61 cacggacagg 70
>31872_mmu-mir-140:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 18 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 78 cacggacagg 87
||||||||||
Sbjct: 61 cacggacagg 70
>33990_ssc-mir-140:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 18 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 78 cacggacagg 87
||||||||||
Sbjct: 61 cacggacagg 70
>34309_dre-mir-140:mirbase
Length = 105
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacaggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacgggat 89
>26714_cfa-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 60
Query: 83 a 83
|
Sbjct: 61 a 61
>27038_eca-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 22 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
Query: 82 g 82
|
Sbjct: 61 g 61
>27039_eca-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 22 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
Query: 82 g 82
|
Sbjct: 61 g 61
>34602_fru-mir-140:mirbase
Length = 67
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 62
Query: 83 ac 84
||
Sbjct: 63 ac 64
>34749_tni-mir-140:mirbase
Length = 67
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 62
Query: 83 ac 84
||
Sbjct: 63 ac 64
>25493_pma-mir-140:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtag 44
||||||||||||||||||||||
Sbjct: 10 cagtggttttaccctatggtag 31
