miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27746_mml-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>28461_hsa-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>28462_hsa-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>30845_ppy-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>30846_ppy-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>32747_rno-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>32748_rno-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>33228_bta-mir-142:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgtg 87
>30234_ptr-mir-142:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>33991_ssc-mir-142:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
Query: 65 actttatggatgagtgtact 84
||||||||||||||||||||
Sbjct: 61 actttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
Query: 65 actttatggatgagtgtact 84
||||||||||||||||||||
Sbjct: 61 actttatggatgagtgtact 80
>25962_gga-mir-142:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
Query: 60 ttcctactttatggatgagtgtactgtg 87
||||||||||||||||||||||||||||
Sbjct: 61 ttcctactttatggatgagtgtactgtg 88
>25963_gga-mir-142:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
Query: 60 ttcctactttatggatgagtgtactgtg 87
||||||||||||||||||||||||||||
Sbjct: 61 ttcctactttatggatgagtgtactgtg 88
>31499_oan-mir-142:mirbase
Length = 110
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 14 gacagtgcagtcatccataaagtagaaagcactactaacagcgctgtagggtgtagtgtt 73
Query: 61 tcctactttatggatgagtgtactgtg 87
|||||||||||||||||||||||||||
Sbjct: 74 tcctactttatggatgagtgtactgtg 100
>27390_mdo-mir-142:mirbase
Length = 74
Score = 131 bits (66), Expect = 9e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 7 gcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctac 66
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaacagcaatgtagggtgtagtgtttcctac 60
Query: 67 tttatggatgagtg 80
||||||||||||||
Sbjct: 61 tttatggatgagtg 74
>27041_eca-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 73 gatg 76
||||
Sbjct: 61 gatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 73 gatg 76
||||
Sbjct: 61 gatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 73 gatg 76
||||
Sbjct: 61 gatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
Query: 73 gatg 76
||||
Sbjct: 61 gatg 64
>26716_cfa-mir-142:mirbase
Length = 63
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 14 cccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatgg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatgg 60
Query: 74 atg 76
|||
Sbjct: 61 atg 63
>26473_tgu-mir-142:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 65 actttatggat 75
|||||||||||
Sbjct: 61 actttatggat 71
>25666_xla-mir-142:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>34311_dre-mir-142a:mirbase
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
Query: 60 ttcctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||||
Sbjct: 63 ttcctactttatggatgagtgtactgt 89
>34312_dre-mir-142a:mirbase
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
Query: 60 ttcctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||||
Sbjct: 63 ttcctactttatggatgagtgtactgt 89
>34313_dre-mir-142b:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>34603_fru-mir-142a:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>34604_fru-mir-142b:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtt 60
||||||| ||||||||||||||||||||||||||| ||| || | ||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
>34750_tni-mir-142a:mirbase
Length = 90
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 63 tcctactttatggatgagtgtactgt 88
>34751_tni-mir-142b:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtt 60
||||||| ||||||||||||||||||||||||||| ||| | | | ||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
