miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27753_mml-mir-146b:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
Query: 61 ttctggtgcccgg 73
|||||||||||||
Sbjct: 61 ttctggtgcccgg 73
>28467_hsa-mir-146b:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
Query: 61 ttctggtgcccgg 73
|||||||||||||
Sbjct: 61 ttctggtgcccgg 73
>28468_hsa-mir-146b:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcag 60
Query: 61 ttctggtgcccgg 73
|||||||||||||
Sbjct: 61 ttctggtgcccgg 73
>30239_ptr-mir-146b:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 2 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
Query: 62 tctggtgcccgg 73
||||||||||||
Sbjct: 61 tctggtgcccgg 72
>30851_ppy-mir-146b:mirbase
Length = 74
Score = 131 bits (66), Expect = 7e-32
Identities = 73/74 (98%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>30852_ppy-mir-146b:mirbase
Length = 74
Score = 131 bits (66), Expect = 7e-32
Identities = 73/74 (98%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>33233_bta-mir-146b:mirbase
Length = 106
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 18 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctagggactca 77
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 78 gttctggtgcccgg 91
>27048_eca-mir-146b:mirbase
Length = 74
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>27047_eca-mir-146b:mirbase
Length = 74
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 61 gttctggtgcccgg 74
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactca 59
|||||| |||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct: 21 cctggctctgagaactgaattccataggctgtgagctctagcagacgccctagggactca 80
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 81 gttctggtgcccgg 94
>33997_ssc-mir-146b:mirbase
Length = 99
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 59
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 13 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 72
Query: 60 gttctggtgcccgg 73
||||||||||||||
Sbjct: 73 gttctggtgcccgg 86
>32753_rno-mir-146b:mirbase
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactca 59
|||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 7 cctggccctgagaactgaattccataggctgtgaactctagcagatgccctagggactca 66
Query: 60 gttctggtgcc 70
|||||||||||
Sbjct: 67 gttctggtgcc 77
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 2 ctggcactgagaactgaattccataggctgtgagctc 38
||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ctggctctgagaactgaattccataggctgtgagctc 37
>26721_cfa-mir-146b:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccataggctgtgagct 37
|||||||||||||||||||||||||||||
Sbjct: 1 tgagaactgaattccataggctgtgagct 29
>31504_oan-mir-146b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 9e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 3 tggcactgagaactgaattccataggctgtgag 35
|||| ||||||||||||||||||||||||||||
Sbjct: 19 tggctctgagaactgaattccataggctgtgag 51
>25497_pma-mir-146:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccataggctgtga 34
||||||||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggctgtga 34
>26476_tgu-mir-146b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tggcactgagaactgaattccataggc 29
|||| ||||||||||||||||||||||
Sbjct: 5 tggctctgagaactgaattccataggc 31
>25966_gga-mir-146b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccataggc 29
|||||||||||||||||||||
Sbjct: 19 tgagaactgaattccataggc 39
>33232_bta-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccataggctgtg 33
|||||||||||||||||||| ||||
Sbjct: 21 tgagaactgaattccataggttgtg 45
>25795_xtr-mir-146:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccatagg 28
||||||||||||||||||||
Sbjct: 18 tgagaactgaattccatagg 37
>34318_dre-mir-146a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 ctgagaactgaattccatag 27
||||||||||||||||||||
Sbjct: 24 ctgagaactgaattccatag 43
