miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27760_mml-mir-151:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacctc 90
>28475_hsa-mir-151:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacctc 90
>28476_hsa-mir-151:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacctc 90
>30246_ptr-mir-151:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacct 89
|||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacct 89
>30859_ppy-mir-151:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacct 89
|||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacct 89
>30860_ppy-mir-151:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
Query: 61 cttgaggacagggatggtcatactcacct 89
|||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacagggatggtcatactcacct 89
>34001_ssc-mir-151:mirbase
Length = 80
Score = 141 bits (71), Expect = 1e-34
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
Query: 61 cttgaggacagggat 75
|||||||||||||||
Sbjct: 62 cttgaggacagggat 76
>34002_ssc-mir-151:mirbase
Length = 80
Score = 141 bits (71), Expect = 1e-34
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2 tttcctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctc 61
Query: 61 cttgaggacagggat 75
|||||||||||||||
Sbjct: 62 cttgaggacagggat 76
>32758_rno-mir-151:mirbase
Length = 97
Score = 139 bits (70), Expect = 4e-34
Identities = 86/90 (95%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 6 tttcctgccctcgaggagctcacagtctagtatgtctcctccc-tactagactgaggctc 64
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||| ||||||||||||||
Sbjct: 65 cttgaggacagggatcgtcatactcacctc 94
>33084_rno-mir-3586:mirbase
Length = 120
Score = 139 bits (70), Expect = 4e-34
Identities = 86/90 (95%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 92 tttcctgccctcgaggagctcacagtctagtatgtctcctccc-tactagactgaggctc 34
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||| ||||||||||||||
Sbjct: 33 cttgaggacagggatcgtcatactcacctc 4
>33085_rno-mir-3586:mirbase
Length = 120
Score = 139 bits (70), Expect = 4e-34
Identities = 86/90 (95%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 1 tttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctc 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 92 tttcctgccctcgaggagctcacagtctagtatgtctcctccc-tactagactgaggctc 34
Query: 61 cttgaggacagggatggtcatactcacctc 90
||||||||||||||| ||||||||||||||
Sbjct: 33 cttgaggacagggatcgtcatactcacctc 4
>27055_eca-mir-151:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
Query: 64 gaggacagg 72
|||||||||
Sbjct: 61 gaggacagg 69
>33238_bta-mir-151:mirbase
Length = 69
Score = 129 bits (65), Expect = 4e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtacgtctcatcccctactagactgaagctcctt 60
Query: 64 gaggacagg 72
|||||||||
Sbjct: 61 gaggacagg 69
>31886_mmu-mir-151:mirbase
Length = 68
Score = 105 bits (53), Expect = 5e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 63
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctcctt 59
Query: 64 gaggacagg 72
|||||||||
Sbjct: 60 gaggacagg 68
>31887_mmu-mir-151:mirbase
Length = 68
Score = 105 bits (53), Expect = 5e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 63
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 1 cctgccctcgaggagctcacagtctagtatgtctcct-ccctactagactgaggctcctt 59
Query: 64 gaggacagg 72
|||||||||
Sbjct: 60 gaggacagg 68
>26727_cfa-mir-151:mirbase
Length = 56
Score = 81.8 bits (41), Expect = 8e-17
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 11 tcgaggagctcacagtctagtatgtctcatcccctactagactgaagctccttgagg 67
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 tcgaggagctcacagtctagtatgtctca-gccctactagactgaggctccttgagg 56
>28477_hsa-mir-151b:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtctag 30
|||||||||||||||||||||||||||
Sbjct: 53 cctgccctcgaggagctcacagtctag 79
>27399_mdo-mir-151:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2 ttcctgccctcgaggagctcacagtcta 29
||||||||||| ||||||||||||||||
Sbjct: 44 ttcctgccctcaaggagctcacagtcta 17
>26968_eca-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>26969_eca-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27259_eca-mir-708:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 89 cctgccctctagaagctcacagtctagt 62
>27492_age-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27552_lla-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>27600_sla-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
>27675_mml-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28111_mml-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>28188_mne-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28274_ggo-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28385_hsa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28386_hsa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>28992_hsa-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>30061_ppa-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>30171_ptr-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>30589_ptr-mir-708:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>30776_ppy-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>31237_ppy-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>32328_mmu-mir-708:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 102 cctgccctctagaagctcacagtctagt 75
>32682_rno-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>32983_rno-mir-708:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| || |||||||||||||||
Sbjct: 86 cctgccctctagaagctcacagtctagt 59
>33157_bta-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgccctcgaggagctcacagtcta 29
||||||| ||||||||||||||||
Sbjct: 7 tgccctcaaggagctcacagtcta 30
>33933_ssc-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
>33934_ssc-mir-28:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtctagt 31
||||||||| ||||||||||| ||||||
Sbjct: 82 cctgccctccaggagctcacaatctagt 55
