miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30869_ppy-mir-181c:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 cggagaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
Query: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggacttgccatcct 110
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggaattgccatcct 110
>28316_ggo-mir-181c:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 cggagaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
Query: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggacttgccatcct 110
|||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 61 ggcaaaccatcgaccgttgagtggaccctgaggcctggaattgccatcct 110
>28487_hsa-mir-181c:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 cggagaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
Query: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggacttgccatcct 110
|||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 61 ggcaaaccatcgaccgttgagtggaccctgaggcctggaattgccatcct 110
>30105_ppa-mir-181c:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 cggagaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
Query: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggacttgccatcct 110
|||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 61 ggcaaaccatcgaccgttgagtggaccctgaggcctggaattgccatcct 110
>30255_ptr-mir-181c:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 cggagaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctca 60
Query: 61 ggcaaaccatcgaccgttgagtggaccctgagacctggacttgccatcct 110
|||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 61 ggcaaaccatcgaccgttgagtggaccctgaggcctggaattgccatcct 110
>33248_bta-mir-181c:mirbase
Length = 97
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 9 ttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaacc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaacc 60
Query: 69 atcgaccgttgagtggaccctgagacctgga 99
|||||||||||||||||||| ||| ||||||
Sbjct: 61 atcgaccgttgagtggaccccgaggcctgga 91
>32766_rno-mir-181c:mirbase
Length = 106
Score = 159 bits (80), Expect = 5e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 4 agaatttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggc 63
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 agaacttgccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcagac 60
Query: 64 aaaccatcgaccgttgagtggaccctgagacctgga 99
||||||||||||||||||||||||| ||| ||||||
Sbjct: 61 aaaccatcgaccgttgagtggaccccgaggcctgga 96
>34010_ssc-mir-181c:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 13 caagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcg 60
Query: 73 accgttgagtggaccctgagacctgga 99
|||||||||||||||| ||| ||||||
Sbjct: 61 accgttgagtggaccccgaggcctgga 87
>31896_mmu-mir-181c:mirbase
Length = 89
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 11 gccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccat 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 gccaagggtttgggggaacattcaacctgtcggtgagtttgggcagctcagacaaaccat 60
Query: 71 cgaccgttgagtggaccctgagacctgga 99
|||||||||||||||||| ||| ||||||
Sbjct: 61 cgaccgttgagtggaccccgaggcctgga 89
>26735_cfa-mir-181c:mirbase
Length = 61
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
Query: 87 c 87
|
Sbjct: 61 c 61
>27405_mdo-mir-181c:mirbase
Length = 72
Score = 91.7 bits (46), Expect = 1e-19
Identities = 66/70 (94%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 21 tgggggaacattcaac-ctgtcggtgagtttgggcagctca-ggcaaaccatcgaccgtt 78
|||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 1 tgggggaacattcaacgctgtcggtgagtttgagcagctgaaggcaaaccatcgaccgtt 60
Query: 79 gagtggaccc 88
||||||||||
Sbjct: 61 gagtggaccc 70
>34758_tni-mir-181a-2:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 23 ggggaacattcaac-ctgtcggtgagtttgg 52
|||||||||||||| ||||||||||||||||
Sbjct: 19 ggggaacattcaacgctgtcggtgagtttgg 49
>27060_eca-mir-181a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>27620_sla-mir-181a-2:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>27768_mml-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>28222_mne-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>28314_ggo-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>28484_hsa-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>30103_ppa-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>30252_ptr-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>30866_ppy-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>31893_mmu-mir-181a-2:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 5 ggaacattcaacgctgtcggtgagtttggg 34
>32763_rno-mir-181a-2:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>33245_bta-mir-181a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 37 ggaacattcaacgctgtcggtgagtttggg 66
>34007_ssc-mir-181a-2:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 8 ggaacattcaacgctgtcggtgagtttggg 37
>34329_dre-mir-181a-2:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 caaaccatcgaccgttgagtggaccctgag 92
|||||||||||||||||| || ||||||||
Sbjct: 45 caaaccatcgaccgttgactgtaccctgag 74
>34611_fru-mir-181a-2:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 23 ggggaacattcaac-ctgtcggtgagttt 50
|||||||||||||| ||||||||||||||
Sbjct: 18 ggggaacattcaacgctgtcggtgagttt 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 aaaccatcgaccgttgagtggaccctga 91
||||||||||| |||||||| |||||||
Sbjct: 57 aaaccatcgactgttgagtgtaccctga 84
>25803_xtr-mir-181a-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 13 gaacattcaacgctgtcggtgagtttgg 40
>25974_gga-mir-181a-1:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 19 gaacattcaacgctgtcggtgagtttgg 46
>26483_tgu-mir-181a-1:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 10 gaacattcaacgctgtcggtgagtttgg 37
>26732_cfa-mir-181a-2:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 27 aacattcaac-ctgtcggtgagtttggg 53
|||||||||| |||||||||||||||||
Sbjct: 1 aacattcaacgctgtcggtgagtttggg 28
>27061_eca-mir-181a-2:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>27403_mdo-mir-181a:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 2 gaacattcaacgctgtcggtgagtttgg 29
>27578_lla-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>27767_mml-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>28221_mne-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>28313_ggo-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>28483_hsa-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>30102_ppa-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>30251_ptr-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>30865_ppy-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>31510_oan-mir-181a:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 29 gaacattcaacgctgtcggtgagtttgg 56
>31892_mmu-mir-181a-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 13 gaacattcaacgctgtcggtgagtttgg 40
>32762_rno-mir-181a-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 14 gaacattcaacgctgtcggtgagtttgg 41
>33063_rno-mir-3570:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 85 gaacattcaacgctgtcggtgagtttgg 58
>33244_bta-mir-181a-1:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 23 gaacattcaacgctgtcggtgagtttgg 50
>34006_ssc-mir-181a-1:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 26 gaacattcaac-ctgtcggtgagtttgg 52
||||||||||| ||||||||||||||||
Sbjct: 22 gaacattcaacgctgtcggtgagtttgg 49
