miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26744_cfa-mir-190a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>28320_ggo-mir-190:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>28497_hsa-mir-190:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30110_ppa-mir-190:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30263_ptr-mir-190a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30878_ppy-mir-190:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>33257_bta-mir-190a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>27411_mdo-mir-190a:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcctgcc 85
>32775_rno-mir-190:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|| ||||||||||||||||||||||
Sbjct: 61 aagcatattcctacagtgtcttgcc 85
>31518_oan-mir-190a:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 4 aggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaa 60
Query: 64 catattcctacagtgtct 81
||||||||||||||||||
Sbjct: 61 catattcctacagtgtct 78
>25981_gga-mir-190:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcctgcc 85
>26489_tgu-mir-190:mirbase
Length = 72
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 63
Query: 68 ttcctacag 76
|||||||||
Sbjct: 64 ttcctacag 72
>27070_eca-mir-190:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34338_dre-mir-190:mirbase
Length = 126
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
Query: 61 aaacatattcctacagtgtc 80
||||||||||||||||||||
Sbjct: 92 aaacatattcctacagtgtc 111
>31906_mmu-mir-190:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaagcatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34618_fru-mir-190:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34765_tni-mir-190:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>31519_oan-mir-190b:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 7 cctctgtgtgatatgtttgatatattaggttgtta 41
||||||||||||||||||| ||||||||||||||
Sbjct: 23 cctctgtgtgatatgtttg--atattaggttgtta 55
>25510_pma-mir-190a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 ccaactatatatcaaacatattc 70
|||||||||||||||||||||||
Sbjct: 49 ccaactatatatcaaacatattc 71
>32776_rno-mir-190b:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/33 (93%), Gaps = 2/33 (6%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatatattaggttgtta 41
||||||||||||||||| ||||||||||||||
Sbjct: 5 tctgtgtgatatgtttg--atattaggttgtta 35
>26745_cfa-mir-190b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>27071_eca-mir-190b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>27412_mdo-mir-190b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 3 tctgtgtgatatgtttgatat 23
>27781_mml-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>28498_hsa-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>30264_ptr-mir-190b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>30879_ppy-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>31907_mmu-mir-190b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>33258_bta-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>34018_ssc-mir-190:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
