miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27785_mml-mir-193a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
Query: 61 acaaagtcccagtcctcggcccccg 85
|||||||||||||||||||||||||
Sbjct: 61 acaaagtcccagtcctcggcccccg 85
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
Query: 61 acaaagtcccagtcctcggcccccg 85
||||||||||||| |||||||||||
Sbjct: 64 acaaagtcccagttctcggcccccg 88
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
Query: 61 acaaagtcccagtcctcggcccccg 85
||||||||||||| |||||||||||
Sbjct: 64 acaaagtcccagttctcggcccccg 88
>30882_ppy-mir-193a:mirbase
Length = 88
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 ggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcct 63
Query: 61 acaaagtcccagtcctcggcccccg 85
|||||||||||||||||||||||||
Sbjct: 64 acaaagtcccagtcctcggcccccg 88
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 ggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcct 63
Query: 61 acaaagtcccagtcctcggcccccg 85
|||||||||||||||||||||||||
Sbjct: 64 acaaagtcccagtcctcggcccccg 88
>30267_ptr-mir-193a:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
Query: 61 acaaagtcccagtcctcggccccc 84
||||||||||||| ||||||||||
Sbjct: 64 acaaagtcccagttctcggccccc 87
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 65 agtcccagtcctcggccc 82
||||||||||||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 65 agtcccagtcctcggccc 82
||||||||||||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>27074_eca-mir-193a:mirbase
Length = 81
Score = 137 bits (69), Expect = 1e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 65 agtcccagtcctcggcccccg 85
|||||||||| ||||||||||
Sbjct: 61 agtcccagtcttcggcccccg 81
>27075_eca-mir-193a:mirbase
Length = 81
Score = 137 bits (69), Expect = 1e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 65 agtcccagtcctcggcccccg 85
|||||||||| ||||||||||
Sbjct: 61 agtcccagtcttcggcccccg 81
>33261_bta-mir-193a:mirbase
Length = 81
Score = 137 bits (69), Expect = 1e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 4 tgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctaca 63
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 64 aagtcccagtcctcggccccc 84
|||||||||||||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>33262_bta-mir-193a:mirbase
Length = 81
Score = 137 bits (69), Expect = 1e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 4 tgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctaca 63
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 64 aagtcccagtcctcggccccc 84
|||||||||||||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>32779_rno-mir-193:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
|||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 7 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 66
Query: 65 agtcccagtcctcggc 80
||||||||||||||||
Sbjct: 67 agtcccagtcctcggc 82
>33036_rno-mir-3549:mirbase
Length = 112
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Minus
Query: 5 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 64
|||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 95 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 36
Query: 65 agtcccagtcctcggc 80
||||||||||||||||
Sbjct: 35 agtcccagtcctcggc 20
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 18 tgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagt 73
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgggtctttgcgggcgagatgagggtgtcggttcaactggcctacaaagtcccagt 56
>31910_mmu-mir-193:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 7e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 16 gctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagtcc 75
||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 5 gctgggtctttgcgggcaagatgagagtgtcagttcaactggcctacaaagtcccagtcc 64
Query: 76 tc 77
||
Sbjct: 65 tc 66
>27414_mdo-mir-193:mirbase
Length = 66
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 18 tgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagt 73
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 7 tgggtctttgtgggcgagatgagggtgtcagttcaactggcctacaaagtcccagt 62
>25982_gga-mir-193a:mirbase
Length = 77
Score = 75.8 bits (38), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 64
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
Query: 65 agtcccagtcctcggc 80
||||||||| ||||||
Sbjct: 61 agtcccagttctcggc 76
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 16 gctgggtctttgcgggcgagatgag-ggtgtcgga--tcaactggcctacaaagtcccag 72
||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct: 1 gctgggtctttgcgggcgagatgagaggttcctgtcttcaactggcctacaaagtcccag 60
Query: 73 tcctcggc 80
| ||||||
Sbjct: 61 ttctcggc 68
>34342_dre-mir-193a-2:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 tcaactggcctacaaagtcccagtcctcggccc 82
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 tcaactggcctacaaagtcccagtcctcggccc 82
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34620_fru-mir-193:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tcaactggcctacaaagtcccagtc 74
|||||||||||||||||||||||||
Sbjct: 48 tcaactggcctacaaagtcccagtc 72
>34341_dre-mir-193a-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tcaactggcctacaaagtcccagt 73
||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagt 82
>34767_tni-mir-193:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tcaactggcctacaaagtcccagt 73
||||||||||||||||||||||||
Sbjct: 43 tcaactggcctacaaagtcccagt 66
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 52 aactggcctacaaagtcccag 72
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
