miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
Query: 61 cccgattcac 70
||||||||||
Sbjct: 61 cccgattcac 70
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
Query: 61 cccgattcac 70
||||||||||
Sbjct: 61 cccgattcac 70
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
Query: 61 cccgattcac 70
||||||||||
Sbjct: 61 cccgattcac 70
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 2 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
Query: 62 ccgattcac 70
|||||||||
Sbjct: 61 ccgattcac 69
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9 gtgaattaggtagtttcatgttgttgggcctggatttctgaacacaacaacattaaacca 68
Query: 61 cccgattcac 70
||||| ||||
Sbjct: 69 cccgactcac 78
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 18 gtgaattaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaacca 77
Query: 61 cccgattcac 70
||||| ||||
Sbjct: 78 cccgactcac 87
>27080_eca-mir-196a:mirbase
Length = 70
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 gtgagttaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaacca 60
Query: 61 cccgattcac 70
||||| ||||
Sbjct: 61 cccgactcac 70
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 97.6 bits (49), Expect = 9e-22
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 18 gtgaagtaggtagtttcatgttgttgggcctggctttctgaacacaacgacatcaaacca 77
Query: 61 cccgattca 69
|| ||||||
Sbjct: 78 cctgattca 86
>32785_rno-mir-196c:mirbase
Length = 80
Score = 91.7 bits (46), Expect = 6e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaacca 60
||||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 5 gtgaagtaggtagtttcgtgttgttgggcctggctttctgaacacaacaacaccaaacca 64
Query: 61 cccgattcac 70
|| |||||||
Sbjct: 65 cctgattcac 74
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggc 29
|||||||||||||||||||||||||||||
Sbjct: 18 gtgaattaggtagtttcatgttgttgggc 46
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>27515_age-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 28 ttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 21 ttaggtagtttcatgttgttggg 43
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 20 ttaggtagtttcatgttgttggg 42
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>25515_pma-mir-196a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 taggtagtttcatgttgttggg 28
||||||||||||||||||||||
Sbjct: 11 taggtagtttcatgttgttggg 32
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 taggtagtttcatgttgttggg 28
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>34349_dre-mir-196b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggc 29
|||| ||||||||||||| ||||||||||
Sbjct: 5 gtgatttaggtagtttcaagttgttgggc 33
>34351_dre-mir-196d:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttgggc 29
|||| ||||||||||| ||||||||||||
Sbjct: 2 gtgatttaggtagttttatgttgttgggc 30
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttgggc 29
||||||||||| ||||||||||||
Sbjct: 15 ttaggtagttttatgttgttgggc 38
>27081_eca-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 10 gtgatttaggtagtttcctgttgttggg 37
>27792_mml-mir-196b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>31526_oan-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 10 gtgatttaggtagtttcctgttgttggg 37
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 10 gtgatttaggtagtttcctgttgttggg 37
>32784_rno-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 10 gtgatttaggtagtttcctgttgttggg 37
>33270_bta-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 10 gtgatttaggtagtttcctgttgttggg 37
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 8 gtgatttaggtagtttcctgttgttggg 35
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gtgaattaggtagtttcatgttgttggg 28
|||| |||||||||||| ||||||||||
Sbjct: 8 gtgatttaggtagtttcctgttgttggg 35
>34350_dre-mir-196c:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
||||||||||| |||||||||||
Sbjct: 22 ttaggtagtttgatgttgttggg 44
>34624_fru-mir-196b:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 7 taggtagtttcatgttgttgggc 29
|||||||||||| ||||||||||
Sbjct: 8 taggtagtttcaagttgttgggc 30
>34771_tni-mir-196b:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 7 taggtagtttcatgttgttgggc 29
|||||||||||| ||||||||||
Sbjct: 8 taggtagtttcaagttgttgggc 30
