miRNEST 2.0, an integrative microRNA resource :: BLAST
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>30112_ppa-mir-196:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>27580_lla-mir-196:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>27515_age-mir-196:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 tgctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaac 60
Query: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgaggg 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcaacaagaaactgcctgagttacatcagtcggttttcgtcgaggg 109
>32783_rno-mir-196a:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 6 gctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggc 65
Query: 66 aacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 200 bits (101), Expect = 2e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 6 gctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggc 62
Query: 66 aacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 63 aacaagaaactgcctgagttacatcagtcggttatcgtcgagggc 107
>31525_oan-mir-196a:mirbase
Length = 114
Score = 182 bits (92), Expect = 4e-47
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 3 ctcgctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactc 62
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7 ctcgctcagctggtctgtggcttaggtagtttcatgttgttgggattgaattttgaactc 66
Query: 63 ggcaacaagaaactgcctgagttacatcagtcggttttcgtcgagggc 110
||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 67 ggcaacaagaaactgtctgagttacatcagtcggttttcgtcgtgggc 114
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 10 agctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaaca 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaaca 60
Query: 70 agaaactgcctgagttacatcagtc 94
|||||||||||||||||||||||||
Sbjct: 61 agaaactgcctgagttacatcagtc 85
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 10 agctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaaca 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaaca 60
Query: 70 agaaactgcctgagttacatcagtc 94
|||||||||||||||||||||||||
Sbjct: 61 agaaactgcctgagttacatcagtc 85
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 25 taggtagtttcatgttgttgggattgagttttgaactcggcaacaagaaactgcctgag 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttgggattgagttttgaactcggcaacaagaaactgcctgag 59
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 97.6 bits (49), Expect = 2e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 9 cagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaac 68
|||||||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 8 cagctgatctgtggtttaggtagtttcatgttgttgggattg-gcttttagctcggcaac 66
Query: 69 aagaaactgcctgagttacatcagt 93
|||||||||||| | |||| |||||
Sbjct: 67 aagaaactgccttaattacgtcagt 91
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 87.7 bits (44), Expect = 2e-18
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 9 cagctgatctgtggcttaggtagtttcatgttgttgggattgagttt--tgaactcggca 66
|||||||||||||| ||||||||||||||||||||||||||| ||| | ||| |||||
Sbjct: 9 cagctgatctgtggtttaggtagtttcatgttgttgggattgctttttcttaacgcggca 68
Query: 67 acaagaaactgcctgagttacatcagt 93
|||||||||||||| | |||| |||||
Sbjct: 69 acaagaaactgccttaattacgtcagt 95
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttgggattg 50
|||| |||||||||||||||||||||||||||
Sbjct: 15 gtggtttaggtagtttcatgttgttgggattg 46
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 tctgtggcttaggtagtttcatgttgttggg 46
||||||| |||||||||||||||||||||||
Sbjct: 7 tctgtggtttaggtagtttcatgttgttggg 37
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttgggatt 49
|||| ||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttgggatt 35
>34350_dre-mir-196c:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 9 cagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaac 68
|||||||| |||| ||||||||||| ||||||||||| |||| || |||| ||||
Sbjct: 7 cagctgatgcgtggtttaggtagtttgatgttgttggggttgacttcctggctcgacaac 66
Query: 69 aagaaactgcct 80
||||||||||||
Sbjct: 67 aagaaactgcct 78
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttggg 46
|||| |||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttggg 37
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttggg 46
|||| |||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttggg 46
|||| |||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttggg 37
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttggg 46
|||| |||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 14 ttaggtagtttcatgttgttggg 36
>27080_eca-mir-196a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>25515_pma-mir-196a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 taggtagtttcatgttgttggg 46
||||||||||||||||||||||
Sbjct: 11 taggtagtttcatgttgttggg 32
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 taggtagtttcatgttgttggg 46
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 tgtggcttaggtagtttcatgttgttggg 46
||||| ||||||||||| |||||||||||
Sbjct: 9 tgtggtttaggtagttttatgttgttggg 37
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 65 caacaagaaactgcctgagttacatcagt 93
|||||||||||||||| | ||||||||||
Sbjct: 56 caacaagaaactgccttaattacatcagt 84
>27081_eca-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 14 ttaggtagtttcctgttgttgggat 38
>27792_mml-mir-196b:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 14 ttaggtagtttcctgttgttgggat 38
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 14 ttaggtagtttcctgttgttgggat 38
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 14 ttaggtagtttcctgttgttgggat 38
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 14 ttaggtagtttcctgttgttgggat 38
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 15 ttaggtagtttcctgttgttgggat 39
>32784_rno-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 15 ttaggtagtttcctgttgttgggat 39
>33270_bta-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 15 ttaggtagtttcctgttgttgggat 39
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 13 ttaggtagtttcctgttgttgggat 37
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttgggat 48
|||||||||||| ||||||||||||
Sbjct: 13 ttaggtagtttcctgttgttgggat 37
>26754_cfa-mir-196b:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 taggtagtttcatgttgttgggat 48
||||||||||| ||||||||||||
Sbjct: 1 taggtagtttcctgttgttgggat 24
