miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgaccc 88
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacact 60
Query: 61 gtctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||||
Sbjct: 61 gtctggtaacgatgttcaaaggtgaccc 88
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2 cgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactg 60
Query: 62 tctggtaacgatgttcaaaggtgaccc 88
|||||||||||||||||||||||||||
Sbjct: 61 tctggtaacgatgttcaaaggtgaccc 87
>27087_eca-mir-200a:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 3 gggcccctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgacccac 90
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgacccac 90
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgacccac 90
||||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgacccac 90
>32788_rno-mir-200a:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 62
Query: 63 ctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||
Sbjct: 63 ctggtaacgatgttcaaaggtgaccca 89
>33035_rno-mir-3548:mirbase
Length = 120
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Minus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 100 gggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacactgt 41
Query: 63 ctggtaacgatgttcaaaggtgaccca 89
|||||||||||||||||||||||||||
Sbjct: 40 ctggtaacgatgttcaaaggtgaccca 14
>33278_bta-mir-200a:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 3 gggcccctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgt 62
||||| ||||| |||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 1 gggcctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgt 60
Query: 63 ctggtaacgatgttcaaaggtgaccc 88
||||||||||||||||||||||||||
Sbjct: 61 ctggtaacgatgttcaaaggtgaccc 86
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| ||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
Query: 69 acgatgttcaaagg 82
|||||||| |||||
Sbjct: 76 acgatgtttaaagg 89
>25991_gga-mir-200a:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
||||| ||||||||| |||||||||||||||| | | | |||||||||||||||||
Sbjct: 7 ctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctggta 66
Query: 69 acgatgttcaaagg 82
|||||||| |||||
Sbjct: 67 acgatgtttaaagg 80
>31528_oan-mir-200a:mirbase
Length = 114
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 actctaacactgtctggtaacgatgttcaa 79
||||||||||||||||||||||||||||||
Sbjct: 62 actctaacactgtctggtaacgatgttcaa 91
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 50 actctaacactgtctggtaacgatgttcaaag 81
||||||||||||||||||||||||||| ||||
Sbjct: 47 actctaacactgtctggtaacgatgtttaaag 78
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgttcaaag 81
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgtttaaag 80
>34355_dre-mir-200a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgtt 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctgga 37
||||||||||||||||||||||
Sbjct: 14 catcttaccggacagtgctgga 35
>34628_fru-mir-200a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 48 tctaacactgtctggtaacgatgtt 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 11 catcttacccgacagtgctggatt 34
>34775_tni-mir-200a:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatgtt 76
|||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaacgatgtt 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 catcttaccggacagtgctggatt 39
||||||||| ||||||||||||||
Sbjct: 1 catcttacctgacagtgctggatt 24
>34310_dre-mir-141:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tctaacactgtctggtaacgatg 74
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
