miRNEST 2.0, an integrative microRNA resource :: BLAST
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ccctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaat 60
Query: 61 gatggagg 68
||||||||
Sbjct: 61 gatggagg 68
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ccctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaat 60
Query: 61 gatggagg 68
||||||||
Sbjct: 61 gatggagg 68
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2 cctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaatg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaatg 60
Query: 62 atggagg 68
|||||||
Sbjct: 61 atggagg 67
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccctcgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaa 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ccctcgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaa 60
Query: 60 tgatggagg 68
|||||||||
Sbjct: 61 tgatggagg 69
>32790_rno-mir-200c:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccctcgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaa 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ccctcgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaa 60
Query: 60 tgatggagg 68
|||||||||
Sbjct: 61 tgatggagg 69
>33069_rno-mir-3575:mirbase
Length = 115
Score = 121 bits (61), Expect = 6e-29
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 1 ccctcgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaa 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 96 ccctcgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaa 37
Query: 60 tgatggagg 68
|||||||||
Sbjct: 36 tgatggagg 28
>33280_bta-mir-200c:mirbase
Length = 65
Score = 113 bits (57), Expect = 2e-26
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 60
Query: 64 ggagg 68
|||||
Sbjct: 61 ggagg 65
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 60
Query: 64 gga 66
|||
Sbjct: 61 gga 63
>27089_eca-mir-200c:mirbase
Length = 64
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 cgtcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgat 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2 cgtcttacccagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgat 61
Query: 64 gga 66
|||
Sbjct: 62 gga 64
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 7 tcttacccagcagtgtttgggtgcggtt-gggagtctctaatactgccgggtaatgatgg 65
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 6 tcttacccagcagtgtttgggtgccgctcgggagtctctaatactgccgggtaatgatgg 65
Query: 66 agg 68
|||
Sbjct: 66 agg 68
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgccgggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 40 gtctctaatactgcctggtaatgatg 65
>27088_eca-mir-200b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgccgggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 39 gtctctaatactgcctggtaatgatg 64
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgccgggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 52 gtctctaatactgcctggtaatgatg 77
>33279_bta-mir-200b:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgccgggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 33 gtctctaatactgcctggtaatgatg 58
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tctctaatactgccgggtaatgatg 64
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>32789_rno-mir-200b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tctctaatactgccgggtaatgatg 64
|||||||||||||| ||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatg 77
>34357_dre-mir-200c:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tctctaatactgccgggtaatgatg 64
|||||||||||||| ||||||||||
Sbjct: 47 tctctaatactgcctggtaatgatg 71
>34629_fru-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tctctaatactgccgggtaatgatg 64
|||||||||||||| ||||||||||
Sbjct: 46 tctctaatactgcctggtaatgatg 70
>25519_pma-mir-200b:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatgg 65
|||||||||||| |||||||||||
Sbjct: 45 tctaatactgcctggtaatgatgg 68
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 41 ctctaatactgccgggtaatgatg 64
||||||||||||| ||||||||||
Sbjct: 38 ctctaatactgcctggtaatgatg 61
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 51 tctaatactgcctggtaatgatg 73
>25992_gga-mir-200b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 44 tctaatactgcctggtaatgatg 66
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 37 tctaatactgcctggtaatgatg 59
>31529_oan-mir-200b:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 59 tctaatactgcctggtaatgatg 81
>34356_dre-mir-200b:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 48 tctaatactgcctggtaatgatg 70
>34776_tni-mir-200b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 tctaatactgccgggtaatgatg 64
|||||||||||| ||||||||||
Sbjct: 37 tctaatactgcctggtaatgatg 59
