miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27988_mml-mir-532:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
Query: 61 ccacacccaaggcttgca 78
||||||||||||||||||
Sbjct: 61 ccacacccaaggcttgca 78
>28785_hsa-mir-532:mirbase
Length = 91
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
Query: 61 ccacacccaaggcttgca 78
||||||||||||||||||
Sbjct: 61 ccacacccaaggcttgca 78
>28786_hsa-mir-532:mirbase
Length = 91
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
Query: 61 ccacacccaaggcttgca 78
||||||||||||||||||
Sbjct: 61 ccacacccaaggcttgca 78
>31124_ppy-mir-532:mirbase
Length = 91
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
Query: 61 ccacacccaaggcttgca 78
||||||||||||||||||
Sbjct: 61 ccacacccaaggcttgca 78
>31125_ppy-mir-532:mirbase
Length = 91
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctc 60
Query: 61 ccacacccaaggcttgca 78
||||||||||||||||||
Sbjct: 61 ccacacccaaggcttgca 78
>30465_ptr-mir-532:mirbase
Length = 90
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
Query: 62 cacacccaaggcttgca 78
|||||||||||||||||
Sbjct: 61 cacacccaaggcttgca 77
>33410_bta-mir-532:mirbase
Length = 86
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcc 60
Query: 62 cacacccaaggcttgca 78
|||||||||||||||||
Sbjct: 61 cacacccaaggcttgca 77
>27223_eca-mir-532:mirbase
Length = 90
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 64 acccaaggcttgca 77
>27224_eca-mir-532:mirbase
Length = 90
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgctttctctcttacatgccttgagtgtaggaccgttggcatcttaattaccctcccac 63
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 64 acccaaggcttgca 77
>32199_mmu-mir-532:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 66 acccaaggcttgca 79
>32200_mmu-mir-532:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 65
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 66 acccaaggcttgca 79
>26874_cfa-mir-532:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 20 catgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaaggcttgca 78
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 catgccttgagtgtaggaccgttggtatcttaattaccctcccacacccaaggcttgca 59
>32947_rno-mir-532:mirbase
Length = 79
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 13 tctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaagg 72
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 4 tctcttccatgccttgagtgtaggactgttgacatcttaattaccctcccacacccaagg 63
Query: 73 cttgca 78
||||||
Sbjct: 64 cttgca 69
>32948_rno-mir-532:mirbase
Length = 79
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 13 tctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccacacccaagg 72
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 4 tctcttccatgccttgagtgtaggactgttgacatcttaattaccctcccacacccaagg 63
Query: 73 cttgca 78
||||||
Sbjct: 64 cttgca 69
>34118_ssc-mir-532:mirbase
Length = 80
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
|||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1 ttgctttctctcttacatgccttgagtgtaggaccgttggcatctgaa-taccctcccac 59
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 60 acccaaggcttgca 73
>34119_ssc-mir-532:mirbase
Length = 80
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
|||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1 ttgctttctctcttacatgccttgagtgtaggaccgttggcatctgaa-taccctcccac 59
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 60 acccaaggcttgca 73
