miRNEST 2.0, an integrative microRNA resource :: BLAST
>28787_hsa-mir-539:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>31126_ppy-mir-539:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>30466_ptr-mir-539:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 60
Query: 62 aatttctttttgagtat 78
|||||||||||||||||
Sbjct: 61 aatttctttttgagtat 77
>27225_eca-mir-539:mirbase
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 61 caatttctttttgagtat 78
>33411_bta-mir-539:mirbase
Length = 78
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgttcgctttatttgggatgaatcatacaagga 60
Query: 61 caatttctttttgagtat 78
|||||||||| |||||||
Sbjct: 61 caatttctttctgagtat 78
>33864_oar-mir-539:mirbase
Length = 110
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 75 caatttctttttgagtat 92
>33865_oar-mir-539:mirbase
Length = 110
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 15 atacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagga 74
Query: 61 caatttctttttgagtat 78
||||||||||||||||||
Sbjct: 75 caatttctttttgagtat 92
>26875_cfa-mir-539:mirbase
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
|||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 61 aatttctttttgagta 76
>32201_mmu-mir-539:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 3e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32202_mmu-mir-539:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 3e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
Query: 62 aatttctttttgagta 77
||||||||||||||||
Sbjct: 59 aatttctttttgagta 74
>32949_rno-mir-539:mirbase
Length = 76
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 1 atacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaaggg 58
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 59 taatttcttttcgagtat 76
>33070_rno-mir-3576:mirbase
Length = 115
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Minus
Query: 1 atacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaagga 60
||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 95 atacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaaggg 38
Query: 61 caatttctttttgagtat 78
|||||||||| ||||||
Sbjct: 37 taatttcttttcgagtat 20
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
>27924_mml-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 26 tgtgttcgctttatttatgatgaatcatacaaggaca 62
|||||||||||| ||||||| |||||||||| |||||
Sbjct: 27 tgtgttcgctttgtttatgacgaatcatacagggaca 63
>26828_cfa-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>27159_eca-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>27883_mml-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>28621_hsa-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>30357_ptr-mir-377:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 15 ccttggtgaattcgctttatttatgttgaatcacacaa 52
>30984_ppy-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>33352_bta-mir-377:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ccttggtgtgttcgctttatttatgatgaatcatacaa 57
|||||||| ||||||||||||||| ||||||| ||||
Sbjct: 16 ccttggtgaattcgctttatttatgttgaatcacacaa 53
>33399_bta-mir-494:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 20 ttatccgtgttgtcttctctttatttatgatgaaacataca 60
>33826_oar-mir-377:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcatacaaggacaatttctttttgagtat 78
||||||||||||||| ||||||| |||| | ||| || | |||||||||
Sbjct: 67 ttcgctttatttatgttgaatcacacaaaggcaacttttgtttgagtat 115
>33827_oar-mir-377:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcatacaaggacaatttctttttgagtat 78
||||||||||||||| ||||||| |||| | ||| || | |||||||||
Sbjct: 67 ttcgctttatttatgttgaatcacacaaaggcaacttttgtttgagtat 115
>33858_oar-mir-494:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
>33859_oar-mir-494:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 25 ttatccgtgttgtattctctttatttatgatgaaacataca 65
>26863_cfa-mir-494:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 36 ctttatttatgatgaaacataca 58
>27204_eca-mir-494:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 36 ctttatttatgatgaaacataca 58
>27765_mml-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>27934_mml-mir-494:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 36 ctttatttatgatgaaacataca 58
>28220_mne-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28312_ggo-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28481_hsa-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>28685_hsa-mir-494:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 36 ctttatttatgatgaaacataca 58
>30101_ppa-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>30249_ptr-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>30397_ptr-mir-494:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 35 ctttatttatgatgaaacataca 57
>30863_ppy-mir-154:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 30 ttcgctttatttatgatgaatcataca 56
|||||||||||| ||| ||||||||||
Sbjct: 33 ttcgctttatttgtgacgaatcataca 59
>31033_ppy-mir-494:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 36 ctttatttatgatgaaacataca 58
>31285_ppy-mir-1197:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tggtgtgttcgctttatttatga 45
|||||||| ||||||||||||||
Sbjct: 32 tggtgtgtacgctttatttatga 54
>32183_mmu-mir-494:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 38 ctttatttatgatgaaacataca 60
>32392_mmu-mir-1197:mirbase
Length = 120
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tggtgtgttcgctttatttatga 45
|||||||| ||||||||||||||
Sbjct: 55 tggtgtgtacgctttatttatga 77
>32936_rno-mir-494:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 34 ctttatttatgatgaatcataca 56
|||||||||||||||| ||||||
Sbjct: 37 ctttatttatgatgaaacataca 59
>33470_bta-mir-1197:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tggtgtgttcgctttatttatga 45
|||||||| ||||||||||||||
Sbjct: 31 tggtgtgtacgctttatttatga 53
>33886_oar-mir-1197:mirbase
Length = 129
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tggtgtgttcgctttatttatga 45
|||||||| ||||||||||||||
Sbjct: 49 tggtgtgtacgctttatttatga 71
>33887_oar-mir-1197:mirbase
Length = 129
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tggtgtgttcgctttatttatga 45
|||||||| ||||||||||||||
Sbjct: 49 tggtgtgtacgctttatttatga 71
