miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28788_hsa-mir-541:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagttcacagaatgggtggtggg 60
Query: 61 cacagaatccggactctgcttgtg 84
||||||||| ||||||||||||||
Sbjct: 61 cacagaatctggactctgcttgtg 84
>31127_ppy-mir-541:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtttacagaatgggtggtggg 60
Query: 61 cacagaatccggactctgcttgtg 84
||||||||||||||||||||||||
Sbjct: 61 cacagaatccggactctgcttgtg 84
>33412_bta-mir-541:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagttcaaaaaatgggtggtggg 60
Query: 61 cacagaatccggactctgcttgtg 84
|||||||||||| |||||||||||
Sbjct: 61 cacagaatccggcctctgcttgtg 84
>27226_eca-mir-541:mirbase
Length = 84
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 1 acgtcagggaaaggattctgctgtcggtcccactccagagttcgcaaaatgggtggtggg 60
Query: 61 cacagaatccggactctgcttgtg 84
|||||||||| | |||||||||||
Sbjct: 61 cacagaatccagtctctgcttgtg 84
>33866_oar-mir-541:mirbase
Length = 115
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
Query: 61 cacagaatccgg 72
||||||||||||
Sbjct: 76 cacagaatccgg 87
>33867_oar-mir-541:mirbase
Length = 115
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 acgtcagggaaaggattctgctgtcggtcccactccaaagtgcatagaatgggtggtggg 60
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
Query: 61 cacagaatccgg 72
||||||||||||
Sbjct: 76 cacagaatccgg 87
