miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27992_mml-mir-542:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
Query: 61 attgataactgaaaggtctgggagccattcatcttca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgataactgaaaggtctgggagccattcatcttca 97
>33413_bta-mir-542:mirbase
Length = 97
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 65
Query: 61 attgataactgaaaggtctgggagcc 86
||||||||||||||||||||||||||
Sbjct: 66 attgataactgaaaggtctgggagcc 91
>28789_hsa-mir-542:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cagatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacag 60
Query: 61 attgataactgaaaggtctgggagccattcatcttca 97
||||||||||||||||||||||||||| |||||||||
Sbjct: 61 attgataactgaaaggtctgggagccactcatcttca 97
>28790_hsa-mir-542:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cagatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacag 60
Query: 61 attgataactgaaaggtctgggagccattcatcttca 97
||||||||||||||||||||||||||| |||||||||
Sbjct: 61 attgataactgaaaggtctgggagccactcatcttca 97
>27227_eca-mir-542:mirbase
Length = 86
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 3 gacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagat 62
Query: 63 tgataactgaaaggtctgggagcc 86
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>27228_eca-mir-542:mirbase
Length = 86
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 3 gacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagat 62
Query: 63 tgataactgaaaggtctgggagcc 86
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>31128_ppy-mir-542:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cagatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacag 60
Query: 61 attgataactgaaaggtctgggagccattcatcttc 96
||||||||||||||||||||||||||| ||||||||
Sbjct: 61 attgataactgaaaggtctgggagccactcatcttc 96
>31129_ppy-mir-542:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 cagacctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacag 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cagatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacag 60
Query: 61 attgataactgaaaggtctgggagccattcatcttc 96
||||||||||||||||||||||||||| ||||||||
Sbjct: 61 attgataactgaaaggtctgggagccactcatcttc 96
>33791_bta-mir-3601:mirbase
Length = 78
Score = 155 bits (78), Expect = 7e-39
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 5 cctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattg 19
Query: 65 ataactgaaaggtctggg 82
||||||||||||||||||
Sbjct: 18 ataactgaaaggtctggg 1
>32206_mmu-mir-542:mirbase
Length = 85
Score = 145 bits (73), Expect = 7e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
Query: 66 taactgaaaggtctgggagcc 86
|||||||||||||||||||||
Sbjct: 65 taactgaaaggtctgggagcc 85
>32207_mmu-mir-542:mirbase
Length = 85
Score = 145 bits (73), Expect = 7e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
Query: 66 taactgaaaggtctgggagcc 86
|||||||||||||||||||||
Sbjct: 65 taactgaaaggtctgggagcc 85
>34120_ssc-mir-542:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 5 cctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattg 64
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cctcagacgtctcggggatcatcatgtcacgagagaccactgtgcacttgtgacagattg 60
Query: 65 ataactgaaaggtctgggag 84
||||||||||||||||||||
Sbjct: 61 ataactgaaaggtctgggag 80
>34121_ssc-mir-542:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 5 cctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattg 64
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cctcagacgtctcggggatcatcatgtcacgagagaccactgtgcacttgtgacagattg 60
Query: 65 ataactgaaaggtctgggag 84
||||||||||||||||||||
Sbjct: 61 ataactgaaaggtctgggag 80
>32952_rno-mir-542:mirbase
Length = 79
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ctcagacgtctcggggatcatcatgtcacgagataccactgcgcacttgtgacagattga 61
Query: 66 taactgaaaggtctggga 83
||||||||||||||||||
Sbjct: 62 taactgaaaggtctggga 79
>32953_rno-mir-542:mirbase
Length = 79
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ctcagacgtctcggggatcatcatgtcacgagataccactgcgcacttgtgacagattga 61
Query: 66 taactgaaaggtctggga 83
||||||||||||||||||
Sbjct: 62 taactgaaaggtctggga 79
>26876_cfa-mir-542:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 16 tcggggatcatcatgtcacgagataccactgtgcacttgtgacagattgataactgaaa 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggggatcatcatgtcacgagataccactgtgcacttgtgacagattgataactgaaa 59
