miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28791_hsa-mir-543:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 3 tacttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtg 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtg 60
Query: 63 cacttctttttcagtatc 80
||||||||||||||||||
Sbjct: 61 cacttctttttcagtatc 78
>31130_ppy-mir-543:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 3 tacttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtg 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtg 60
Query: 63 cacttctttttcagtatc 80
||||||||||||||||||
Sbjct: 61 cacttctttttcagtatc 78
>30467_ptr-mir-543:mirbase
Length = 77
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 4 acttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgc 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgc 60
Query: 64 acttctttttcagtatc 80
||||||| |||||||||
Sbjct: 61 acttcttcttcagtatc 77
>33414_bta-mir-543:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 65 cttctttttcagtatc 80
>33868_oar-mir-543:mirbase
Length = 123
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 93 cttctttttcagtatc 108
>33869_oar-mir-543:mirbase
Length = 123
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 93 cttctttttcagtatc 108
>27229_eca-mir-543:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttaaggagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 60
Query: 65 cttctttttcag 76
||||||||||||
Sbjct: 61 cttctttttcag 72
>32208_mmu-mir-543:mirbase
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
Query: 65 cttctttttcag 76
||||||||||||
Sbjct: 63 cttctttttcag 74
>32954_rno-mir-543:mirbase
Length = 80
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 64
Query: 65 cttctttttcag 76
||||||||||||
Sbjct: 65 cttctttttcag 76
>26877_cfa-mir-543:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttctt 70
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttctt 58
>27935_mml-mir-495:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>28686_hsa-mir-495:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>30398_ptr-mir-495:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct: 12 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 71
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 72 ttcggtatc 80
>31034_ppy-mir-495:mirbase
Length = 79
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct: 10 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 69
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 70 ttcggtatc 78
>27205_eca-mir-495:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||| || |||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>32937_rno-mir-495:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtc-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 69
||||||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 10 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 69
Query: 70 ttttc 74
|||||
Sbjct: 70 ttttc 74
>33860_oar-mir-495:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
|||||| |||| ||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
Query: 72 ttc 74
|||
Sbjct: 102 ttc 104
>33861_oar-mir-495:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
|||||| |||| ||| ||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
Query: 72 ttc 74
|||
Sbjct: 102 ttc 104
>32184_mmu-mir-495:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 53/61 (86%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtc-tttttcgcttt-atttgtgacgaaacattcgcggtgcacttct 69
||||||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 3 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 62
Query: 70 t 70
|
Sbjct: 63 t 63
>27765_mml-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>28220_mne-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>28312_ggo-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>28481_hsa-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>30101_ppa-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>30249_ptr-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
>30863_ppy-mir-154:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaa 50
||||||||||||||||||||
Sbjct: 33 ttcgctttatttgtgacgaa 52
