miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28037_mml-mir-590:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
Query: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
>31169_ppy-mir-590:mirbase
Length = 97
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaatt 60
Query: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
||||||||||||| |||||| | ||||||||||||||
Sbjct: 61 ttatgtataagctagtctctgattgaaacgtgcagca 97
>31170_ppy-mir-590:mirbase
Length = 97
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaatt 60
Query: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
||||||||||||| |||||| | ||||||||||||||
Sbjct: 61 ttatgtataagctagtctctgattgaaacgtgcagca 97
>28905_hsa-mir-590:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaatt 60
Query: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
||||||||||||| |||||| | |||||| |||||||
Sbjct: 61 ttatgtataagctagtctctgattgaaacatgcagca 97
>28906_hsa-mir-590:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaatt 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 tagccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaatt 60
Query: 61 ttatgtataagctggtctctaactgaaacgtgcagca 97
||||||||||||| |||||| | |||||| |||||||
Sbjct: 61 ttatgtataagctagtctctgattgaaacatgcagca 97
>30525_ptr-mir-590:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattt 61
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1 agccagtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattt 60
Query: 62 tatgtataagctggtctctaactgaaacgtgcagca 97
|||||||||||| |||||| | |||||| |||||||
Sbjct: 61 tatgtataagctagtctctgattgaaacatgcagca 96
>32219_mmu-mir-590:mirbase
Length = 81
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
Query: 66 tataagctggtctct 80
|||||||| ||||||
Sbjct: 61 tataagctagtctct 75
>32220_mmu-mir-590:mirbase
Length = 81
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 6 agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1 agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
Query: 66 tataagctggtctct 80
|||||||| ||||||
Sbjct: 61 tataagctagtctct 75
>27238_eca-mir-590:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 8 tcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatgta 67
||||||| |||||||||||||||||| |||||| | ||| | |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 68 taagctggtctct 80
|||||| ||||||
Sbjct: 64 taagctagtctct 76
>27239_eca-mir-590:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 8 tcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatgta 67
||||||| |||||||||||||||||| |||||| | ||| | |||||||||||||||
Sbjct: 4 tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63
Query: 68 taagctggtctct 80
|||||| ||||||
Sbjct: 64 taagctagtctct 76
>26887_cfa-mir-590:mirbase
Length = 61
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 16 gagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatgtataagct 73
|||||||||||||||||| ||||||| | ||| | |||||||||||||||||||||
Sbjct: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagct 58
>31563_oan-mir-590:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 5e-09
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 2 agccagtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattt 61
||||| |||||||||||||||| ||||||||| |||||| || ||| | ||||| |||
Sbjct: 17 agccaatcagaaatgagcttatccataaaagtacagtatcgt-cagtaaacctgtacttt 75
Query: 62 tatgtataagctggtctctaactgaaac 89
|||| ||||||| |||||| | ||||||
Sbjct: 76 tatggataagctagtctctgattgaaac 103
