miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 68
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 69 tccttctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 61
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 62 tccttctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 61 tccttctggca 71
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 68
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 69 tccttctggca 79
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 65 tctggca 71
|||||||
Sbjct: 73 tctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 65 tctggca 71
|||||||
Sbjct: 73 tctggca 79
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 72 tccttctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
Query: 61 tccttctggca 71
|||||||||||
Sbjct: 72 tccttctggca 82
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
Query: 65 tct 67
|||
Sbjct: 70 tct 72
>26950_eca-mir-18a:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 66 c 66
|
Sbjct: 61 c 61
>34211_dre-mir-18a:mirbase
Length = 83
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
Query: 65 tctggca 71
|||||||
Sbjct: 70 tctggca 76
>34550_fru-mir-18:mirbase
Length = 76
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
Query: 65 tctggca 71
|||||||
Sbjct: 66 tctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
Query: 65 tctggca 71
|||||||
Sbjct: 66 tctggca 72
>31432_oan-mir-18:mirbase
Length = 130
Score = 99.6 bits (50), Expect = 2e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 66 ctggca 71
||||||
Sbjct: 89 ctggca 94
>34212_dre-mir-18b:mirbase
Length = 87
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
Query: 65 tctggca 71
|||||||
Sbjct: 72 tctggca 78
>25900_gga-mir-18b:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 66 ctggca 71
||||||
Sbjct: 75 ctggca 80
>27657_mml-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 66 ctggca 71
||||||
Sbjct: 66 ctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 66 ctggca 71
||||||
Sbjct: 66 ctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 66 ctggca 71
||||||
Sbjct: 66 ctggca 71
>33135_bta-mir-18b:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 66 ctggca 71
||||||
Sbjct: 68 ctggca 73
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 70
Query: 66 ctggca 71
||||||
Sbjct: 71 ctggca 76
>25656_xla-mir-18:mirbase
Length = 79
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
Query: 66 ctggca 71
|||||
Sbjct: 69 ttggca 74
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
Query: 66 ctggca 71
|||||
Sbjct: 69 ttggca 74
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| || |
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgccccat 65
Query: 66 ctggc 70
|||||
Sbjct: 66 ctggc 70
>26951_eca-mir-18b:mirbase
Length = 59
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaa 56
||||||||||||||||||| |||||||| || |||| ||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 51
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
Query: 66 ctggca 71
| ||||
Sbjct: 68 ccggca 73
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
||||||||||||||||| | |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatgcccctt 70
Query: 66 ct 67
||
Sbjct: 71 ct 72
>25433_pma-mir-18a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagt 29
|||||||||||||||||||||||||
Sbjct: 17 ctaaggtgcatctagtgcagatagt 41
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 taaggtgcatctagtgcagatagtgaagtag 36
||||||||||||||||||| |||||| ||||
Sbjct: 101 taaggtgcatctagtgcagttagtgatgtag 131
>34213_dre-mir-18c:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 aaggtgcatctagtgcagatagtg 30
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
