miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28284_ggo-mir-33:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
Query: 61 gcatcacag 69
|||||||||
Sbjct: 61 gcatcacag 69
>30071_ppa-mir-33:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
Query: 61 gcatcacag 69
|||||||||
Sbjct: 61 gcatcacag 69
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
Query: 61 gcatcacag 69
|||||||||
Sbjct: 61 gcatcacag 69
>26982_eca-mir-33a:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggcggtacccatgcaatgtttccacagt 60
Query: 61 gcatcacag 69
|||||||||
Sbjct: 61 gcatcacag 69
>30789_ppy-mir-33:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
Query: 65 cacag 69
|||||
Sbjct: 65 cacag 69
>27689_mml-mir-33a:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
Query: 65 cacag 69
||||
Sbjct: 65 tacag 69
>28196_mne-mir-33:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
Query: 65 cacag 69
||||
Sbjct: 65 tacag 69
>33173_bta-mir-33a:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 64
Query: 65 cacag 69
|||||
Sbjct: 65 cacag 69
>26661_cfa-mir-33:mirbase
Length = 61
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
Query: 66 a 66
|
Sbjct: 61 a 61
>32696_rno-mir-33:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>31814_mmu-mir-33:mirbase
Length = 69
Score = 93.7 bits (47), Expect = 1e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagt 60
Query: 61 gcatcac 67
|||||||
Sbjct: 61 gcatcac 67
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgt 29
>31460_oan-mir-33b:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||| ||||||||||||||||||||| |||| || |||| ||||||||| |||||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagt 68
Query: 61 gcatcacag 69
|||| ||||
Sbjct: 69 gcattacag 77
>31461_oan-mir-33b:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||| ||||||||||||||||||||| |||| || |||| ||||||||| |||||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagt 68
Query: 61 gcatcacag 69
|||| ||||
Sbjct: 69 gcattacag 77
>25924_gga-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgttctgg 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtagtgcattgtagttgcattgcatgtgctgg 34
>26431_tgu-mir-33:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgtt 30
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgtagtgcattgtagttgcattgcatgtt 35
>37721_tca-mir-33:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgtt 49
>37722_tca-mir-33:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgtt 49
>38738_cte-mir-33:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||||
Sbjct: 19 tggtgcattgtagttgcattgcatg 43
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 6 ggtgcattgtagttgcattgcatgt 30
>24658_bfl-mir-33-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 15 ggtgcattgtagttgcattgcatgt 39
>31458_oan-mir-33a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgt 29
|||| ||||||||||||||||||||||||
Sbjct: 17 ctgtagtgcattgtagttgcattgcatgt 45
>31459_oan-mir-33a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattgcatgt 29
|||| ||||||||||||||||||||||||
Sbjct: 17 ctgtagtgcattgtagttgcattgcatgt 45
>38857_lgi-mir-33:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcat 27
||||||||||||||||||||||||
Sbjct: 19 tggtgcattgtagttgcattgcat 42
>25464_pma-mir-33a:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctgtggtgcattgtagttgcattg 24
||||||||||||||||||||||||
Sbjct: 11 ctgtggtgcattgtagttgcattg 34
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>37644_nvi-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcatgt 29
||||||||||| ||||||||||||||
Sbjct: 4 tggtgcattgttgttgcattgcatgt 29
>27359_mdo-mir-33:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 1 ggtgcattgtagttgcattgca 22
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 tgcaatgtttccacagtgcatc 65
||||||||||||||||||||||
Sbjct: 39 tgcaatgtttccacagtgcatc 60
>35183_aae-mir-33:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 8 ggtgcattgtagttgcattgca 29
>36014_cqu-mir-33:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 2 ggtgcattgtagttgcattgca 23
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>35004_dpu-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgca 41
>35530_bmo-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgca 31
>34814_spu-mir-33:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcat 27
||||||||||| ||||||||||||
Sbjct: 19 tggtgcattgtcgttgcattgcat 42
