miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30186_ptr-mir-33b:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 2 cgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcct 60
Query: 62 cggcagtgcagcccggagccggcccctggcaccac 96
|||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcagtgcagcccggagccggcccctggcaccac 95
>27690_mml-mir-33b:mirbase
Length = 96
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gcgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcc 60
Query: 61 tcggcagtgcagcccggagccggcccctggcacc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcagtgcagcccggagccggcccctggcacc 94
>26662_cfa-mir-33b:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gcgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcc 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 1 gcgggcggccccgcggtgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcc 60
Query: 61 tcggcagtgcagcccggagccggcccctggcacc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggcagtgcagcccggagccggcccctggcacc 94
>33174_bta-mir-33b:mirbase
Length = 94
Score = 157 bits (79), Expect = 2e-39
Identities = 91/94 (96%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1 gcgggcggccccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcc 60
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1 gcgggcggccccgcggtgcattgctgttgcattgca--tgtgtgaggcaggtgcagtgcc 58
Query: 61 tcggcagtgcagcccggagccggcccctggcacc 94
||||||||||||||||||||||||||||||||||
Sbjct: 59 tcggcagtgcagcccggagccggcccctggcacc 92
>26983_eca-mir-33b:mirbase
Length = 56
Score = 111 bits (56), Expect = 9e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
>30790_ppy-mir-33b:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 50 ggtgcagtgcctcggcagtgcagcccggagccggcccctggcacc 94
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ggtgcagtgcctcggcagtgcagcccggagccggcccctggcacc 90
